Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24343 Brassica carinata HOM05D001279 ORTHO05D001636 1.6e-39 165.6 84 100.0
A10p05430 Brassica napus HOM05D001279 ORTHO05D001636 3.0e-09 65.1 79 50.6
C05p05010 Brassica napus HOM05D001279 ORTHO05D001636 3.0e-09 65.1 79 50.6
BraA10t42807Z Brassica rapa HOM05D001279 ORTHO05D001636 3.9e-09 64.7 79 49.4
Sp1g05590 Schrenkiella parvula HOM05D001279 ORTHO05D001636 6.6e-09 63.9 80 48.8
BcaB03g13865 Brassica carinata HOM05D001279 ORTHO05D001636 1.1e-08 63.2 85 49.4
Hund26614 Selenicereus undatus HOM05D001279 ORTHO05D001636 1.1e-08 63.2 57 54.4
AL1G16890 Arabidopsis lyrata HOM05D001279 ORTHO05D001636 1.5e-08 62.8 79 54.4
BcaC05g24656 Brassica carinata HOM05D001279 ORTHO05D001636 1.9e-08 62.4 79 49.4
BolC5t29273H Brassica oleracea HOM05D001279 ORTHO05D001636 1.9e-08 62.4 79 49.4
C08p50960 Brassica napus HOM05D001279 ORTHO05D001636 2.5e-08 62.0 80 53.8
BcaC07g42541 Brassica carinata HOM05D001279 ORTHO05D001636 3.3e-08 61.6 80 47.5
A04p23190 Brassica napus HOM05D001279 ORTHO05D001636 3.3e-08 61.6 79 51.9
A09p66730 Brassica napus HOM05D001279 ORTHO05D001636 3.3e-08 61.6 80 47.5
BolC8t52624H Brassica oleracea HOM05D001279 ORTHO05D001636 3.3e-08 61.6 80 47.5
BcaB02g06765 Brassica carinata HOM05D001279 ORTHO05D001636 5.6e-08 60.8 80 47.5
Carub.0001s0617 Capsella rubella HOM05D001279 ORTHO05D001636 5.6e-08 60.8 79 53.2
Thhalv10008025m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 9.6e-08 60.1 79 45.6
AT1G06870 Arabidopsis thaliana HOM05D001279 ORTHO05D001636 1.2e-07 59.7 79 51.9
BraA09t42012Z Brassica rapa HOM05D001279 ORTHO05D001636 1.2e-07 59.7 80 46.2
AL4G25320 Arabidopsis lyrata HOM05D001279 ORTHO05D001636 1.6e-07 59.3 79 46.8
AT2G30440 Arabidopsis thaliana HOM05D001279 ORTHO05D001636 2.1e-07 58.9 82 46.3
CSS0004889 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 2.1e-07 58.9 80 42.5
CSS0007824 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 2.1e-07 58.9 80 42.5
Cpa.g.sc357.9 Carica papaya HOM05D001279 ORTHO05D001636 2.8e-07 58.5 80 42.5
HanXRQChr02g0046581 Helianthus annuus HOM05D001279 ORTHO05D001636 2.8e-07 58.5 80 45.0
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 2.8e-07 58.5 80 40.0
Sc15g0006530 Simmondsia chinensis HOM05D001279 ORTHO05D001636 3.6e-07 58.2 80 46.2
BcaC07g42545 Brassica carinata HOM05D001279 ORTHO05D001636 4.7e-07 57.8 80 46.2
PGR031G2154 Punica granatum HOM05D001279 ORTHO05D001636 4.7e-07 57.8 80 45.0
Hund20787 Selenicereus undatus HOM05D001279 ORTHO05D001636 4.7e-07 57.8 80 42.5
Zm00001eb314690 Zea mays HOM05D001279 ORTHO05D001636 4.7e-07 57.8 80 43.8
Atru.chr2.855 Acer truncatum HOM05D001279 ORTHO05D001636 6.2e-07 57.4 80 45.0
Thhalv10016873m.g Eutrema salsugineum HOM05D001279 ORTHO05D001636 6.2e-07 57.4 79 44.3
BraA04t17846Z Brassica rapa HOM05D001279 ORTHO05D001636 8.1e-07 57.0 79 45.6
Lsat_1_v5_gn_1_19240 Lactuca sativa HOM05D001279 ORTHO05D001636 8.1e-07 57.0 80 43.8
Atru.chr13.603 Acer truncatum HOM05D001279 ORTHO05D001636 1.1e-06 56.6 80 43.8
Carub.0004s1161 Capsella rubella HOM05D001279 ORTHO05D001636 1.1e-06 56.6 79 45.6
Lsat_1_v5_gn_5_64901 Lactuca sativa HOM05D001279 ORTHO05D001636 1.1e-06 56.6 79 44.3
Lsat_1_v5_gn_6_39181 Lactuca sativa HOM05D003081 ORTHO05D003627 1.1e-06 56.6 79 44.3
Lsat_1_v5_gn_8_160280 Lactuca sativa HOM05D001279 ORTHO05D001636 1.1e-06 56.6 92 41.3
Manes.18G035350 Manihot esculenta HOM05D001279 ORTHO05D001636 1.1e-06 56.6 80 43.8
PGSC0003DMG401011681 Solanum tuberosum HOM05D001279 ORTHO05D001636 1.1e-06 56.6 81 42.0
AUR62040083 Chenopodium quinoa HOM05D001279 ORTHO05D001636 1.4e-06 56.2 80 41.2
Nn5g29386 Nelumbo nucifera HOM05D001279 ORTHO05D001636 1.4e-06 56.2 89 38.2
PGR031G0097 Punica granatum HOM05D001279 ORTHO05D001636 1.4e-06 56.2 80 45.0
Solyc04g079550.4 Solanum lycopersicum HOM05D001279 ORTHO05D001636 1.4e-06 56.2 81 42.0
Sopen04g033130 Solanum pennellii HOM05D001279 ORTHO05D001636 1.4e-06 56.2 81 42.0
ATR0733G003 Amborella trichopoda HOM05D001279 ORTHO05D001636 1.8e-06 55.8 80 38.8
Eucgr.F00038 Eucalyptus grandis HOM05D001279 ORTHO05D001636 1.8e-06 55.8 81 43.2
HanXRQChr04g0104241 Helianthus annuus HOM05D001279 ORTHO05D001636 1.8e-06 55.8 78 42.3
THA.LOC104815189 Tarenaya hassleriana HOM05D001279 ORTHO05D001636 1.8e-06 55.8 80 42.5
BcaC02g08020 Brassica carinata HOM05D001279 ORTHO05D001636 2.4e-06 55.5 79 44.3
C04p59340 Brassica napus HOM05D001279 ORTHO05D001636 2.4e-06 55.5 79 44.3
BolC4t27442H Brassica oleracea HOM05D001279 ORTHO05D001636 2.4e-06 55.5 79 44.3
Aa31LG1G7950 Aethionema arabicum HOM05D001279 ORTHO05D001636 3.1e-06 55.1 89 44.9
EL10Ac1g01830 Beta vulgaris HOM05D001279 ORTHO05D001636 3.1e-06 55.1 80 41.2
BcaB06g28366 Brassica carinata HOM05D001279 ORTHO05D001636 3.1e-06 55.1 79 43.0
Cfa018490 Carpinus fangiana HOM05D001279 ORTHO05D001636 3.1e-06 55.1 80 42.5
Migut.N01484 Erythranthe guttata HOM05D001279 ORTHO05D001636 3.1e-06 55.1 80 43.8
Eucgr.F02385 Eucalyptus grandis HOM05D001279 ORTHO05D001636 3.1e-06 55.1 79 40.5
Nitab4.5_0000068g0170 Nicotiana tabacum HOM05D001279 ORTHO05D001636 3.1e-06 55.1 80 42.5
Zm00001eb214120 Zea mays HOM05D001279 ORTHO05D001636 3.1e-06 55.1 80 40.0
CSS0048313 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D001636 4.0e-06 54.7 80 46.2
CAN.G371.81 Capsicum annuum HOM05D001279 ORTHO05D001636 4.0e-06 54.7 81 42.0
AUR62033883 Chenopodium quinoa HOM05D001279 ORTHO05D001636 4.0e-06 54.7 80 40.0
Haze_17584 Corylus avellana HOM05D001279 ORTHO05D001636 4.0e-06 54.7 80 41.2
MELO3C010903.2 Cucumis melo HOM05D001279 ORTHO05D001636 4.0e-06 54.7 82 42.7
Gohir.A06G015400 Gossypium hirsutum HOM05D001279 ORTHO05D001636 4.0e-06 54.7 80 40.0
Lsat_1_v5_gn_4_37140 Lactuca sativa HOM05D001279 ORTHO05D001636 4.0e-06 54.7 80 42.5
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 5.2e-06 54.3 80 41.2
FAN20G0232 Fragaria x ananassa HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 40.0
FAN20G1724 Fragaria x ananassa HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 40.0
FAN27G0688 Fragaria x ananassa HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 40.0
Gohir.D05G202100 Gossypium hirsutum HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 42.5
Gohir.D06G013500 Gossypium hirsutum HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 43.8
Gorai.009G208000 Gossypium raimondii HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 42.5
Gorai.010G016100 Gossypium raimondii HOM05D001279 ORTHO05D001636 5.2e-06 54.3 80 43.8
Aa31LG5G6300 Aethionema arabicum HOM05D001279 ORTHO05D001636 6.9e-06 53.9 80 43.8
Cc10_g03740 Coffea canephora HOM05D001279 ORTHO05D001636 6.9e-06 53.9 80 40.0
ECA247G0254 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.9e-06 53.9 80 42.5
Migut.N02686 Erythranthe guttata HOM05D001279 ORTHO05D001636 6.9e-06 53.9 80 41.2
MBI16_g19898_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D001636 6.9e-06 53.9 80 36.2
Manes.05G169200 Manihot esculenta HOM05D001279 ORTHO05D001636 6.9e-06 53.9 80 38.8
Nitab4.5_0008935g0020 Nicotiana tabacum HOM05D001279 ORTHO05D001636 6.9e-06 53.9 89 39.3
Sp4g12990 Schrenkiella parvula HOM05D001279 ORTHO05D001636 6.9e-06 53.9 79 41.8
Dinv39352 Davidia involucrata HOM05D001279 ORTHO05D001636 9.0e-06 53.5 80 38.8
SGA_v2.0_scaffold14G07024 Striga asiatica HOM05D001279 ORTHO05D001636 9.0e-06 53.5 80 45.0


User provided reference genes

Program Settings