Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-124 448.7 229 100.0
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.0e-120 436.8 229 96.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-120 435.6 229 96.9
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.9e-119 432.6 229 95.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.6e-119 431.0 226 95.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 7.3e-119 430.6 226 96.9
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 4.8e-118 427.9 230 95.2
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.2e-118 427.6 226 95.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-117 426.0 226 95.1
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.4e-117 425.6 226 94.7
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.3e-117 424.5 226 94.2
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.5e-116 422.9 226 93.8
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-116 422.2 230 94.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-116 421.8 230 94.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-115 419.9 230 93.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.8e-110 402.1 226 87.6
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-109 399.1 226 86.7
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.3e-109 397.9 226 87.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 6.9e-109 397.5 209 96.7
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.4e-108 395.2 224 87.5
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.4e-108 395.2 226 86.7
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-107 393.3 221 87.3
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.2e-107 392.5 226 85.8
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.2e-107 392.5 221 87.3
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-106 389.8 212 95.3
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.4e-106 389.8 212 95.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.0e-104 382.1 207 95.2
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.1e-101 373.6 224 83.5
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 6.5e-99 364.4 226 78.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.1e-98 363.6 226 77.9
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.2e-98 362.1 203 87.7
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.2e-97 360.1 226 76.1
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.2e-97 360.1 226 77.4
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 4.6e-97 358.2 226 76.5
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.3e-96 356.7 227 75.3
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 3.0e-96 355.5 226 77.9
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.0e-96 355.5 224 77.2
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 5.1e-96 354.8 202 86.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.1e-96 354.8 227 76.7
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 5.1e-96 354.8 226 77.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 6.7e-96 354.4 226 76.5
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 8.7e-96 354.0 226 77.4
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.1e-95 353.6 226 75.2
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.5e-95 352.4 224 76.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.5e-95 352.4 226 75.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.5e-95 352.4 227 75.8
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.7e-95 351.3 224 76.8
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 9.7e-95 350.5 225 75.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.2e-94 349.4 229 73.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.7e-94 348.6 225 76.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 3.7e-94 348.6 227 73.6
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 4.8e-94 348.2 227 73.6
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 4.8e-94 348.2 220 75.9
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 6.3e-94 347.8 229 73.4
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 6.3e-94 347.8 227 73.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 8.2e-94 347.4 226 76.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.4e-93 346.7 227 74.0
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.8e-93 346.3 227 72.2
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.8e-93 346.3 229 73.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.4e-93 345.9 225 75.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.4e-93 345.9 218 77.5
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.1e-93 345.5 229 72.9
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 4.1e-93 345.1 218 77.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.0e-92 342.8 219 76.7
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.6e-92 342.4 223 74.4
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 3.4e-92 342.0 225 75.1
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.5e-92 341.7 216 77.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.7e-92 340.9 219 76.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.7e-91 339.7 226 73.5
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 225 75.6
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.7e-91 339.7 225 75.6
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.2e-91 339.3 222 75.7
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.9e-91 339.0 225 75.1
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 3.8e-91 338.6 216 77.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.0e-91 338.2 225 75.1
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 8.5e-91 337.4 226 73.5
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.4e-90 336.7 226 72.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.9e-90 336.3 225 74.7
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.2e-90 335.1 226 72.1
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.5e-90 334.7 226 72.6
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 7.2e-90 334.3 220 75.0
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.0e-88 330.5 217 76.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.8e-88 329.7 222 70.3
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.3e-88 329.3 225 73.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 3.0e-88 328.9 224 74.6
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 5.1e-88 328.2 218 72.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 8.8e-88 327.4 229 70.3
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.3e-87 325.5 224 72.8
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.7e-87 323.9 224 72.3
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.7e-86 323.2 226 71.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.7e-86 323.2 215 73.0
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.8e-86 322.4 221 71.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.7e-86 322.0 226 71.2
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.7e-86 322.0 215 72.1
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.8e-86 321.6 216 72.2
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 4.8e-86 321.6 226 69.5
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 6.3e-86 321.2 240 68.8
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.1e-85 320.5 219 71.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.1e-85 320.5 221 70.1
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.4e-85 319.3 208 74.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.4e-85 319.3 210 71.9
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.4e-85 319.3 221 69.2
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.4e-85 319.3 205 74.1
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.1e-85 318.9 221 70.6
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.1e-85 318.9 207 73.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 6.9e-85 317.8 226 68.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 6.9e-85 317.8 226 68.6
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.5e-84 316.6 203 75.9
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.5e-84 315.1 229 68.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.7e-83 313.2 221 71.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.2e-83 312.8 211 71.1
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.9e-83 312.4 229 67.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.8e-83 312.0 224 69.2
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.9e-82 309.7 208 73.6
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 3.2e-82 308.9 204 75.5
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.4e-82 307.4 222 68.0
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.7e-81 305.1 265 60.8
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.0e-80 303.9 229 67.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.8e-80 303.1 230 67.4
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.1e-79 300.4 222 66.7
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.3e-79 298.9 207 70.5
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 7.4e-79 297.7 205 71.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 8.2e-78 294.3 203 71.9
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 3.5e-76 288.9 247 60.3
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.4e-74 283.5 204 73.0
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.4e-74 283.5 212 65.1
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.5e-74 282.7 213 65.3
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 4.2e-74 282.0 202 68.3
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 8.0e-73 277.7 198 69.7
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.1e-71 273.9 218 66.5
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.6e-71 272.7 186 73.7
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 5.7e-71 271.6 194 70.1
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.4e-71 271.2 215 65.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 9.7e-71 270.8 214 65.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-70 268.9 159 84.9
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.1e-69 267.3 222 61.3
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-68 263.8 175 74.3
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.5e-68 262.3 216 63.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 4.2e-66 255.4 183 78.1
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-64 249.6 209 61.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.2e-63 247.3 225 59.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 2.6e-63 246.1 224 55.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.8e-62 242.7 231 58.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.8e-61 240.0 160 74.4
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.2e-60 237.3 150 78.7
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.9e-59 232.6 214 58.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.2e-58 229.2 215 58.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 5.5e-58 228.4 213 56.8
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 7.2e-58 228.0 180 66.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.8e-56 223.4 219 55.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.6e-55 219.5 214 55.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 9.8e-55 217.6 222 53.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 6.3e-54 214.9 186 63.4
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.7e-52 209.5 229 51.5
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.5e-50 201.1 117 88.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.8e-48 196.8 211 50.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 4.0e-48 195.7 219 58.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.6e-44 183.7 107 85.0
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.8e-41 172.9 238 45.8
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-40 169.9 119 79.0
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 7.8e-36 154.8 241 41.1
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.3e-35 153.3 217 43.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 6.6e-35 151.8 99 75.8
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.1e-34 151.0 111 64.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-33 146.7 220 42.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-28 131.0 132 53.8
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 7.3e-26 121.7 167 43.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.4e-24 117.5 78 71.8
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.8e-20 101.7 70 65.7
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.6e-17 94.0 74 63.5
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.9e-13 80.5 205 30.7
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.7e-11 73.9 71 52.1
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.9e-11 72.8 105 42.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.0e-08 62.8 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 3.4e-07 59.7 72 50.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 2.9e-06 56.6 66 50.0


User provided reference genes

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