Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 1.0e-28 129.4 67 100.0
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 4.3e-27 124.0 67 94.0
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 4.3e-27 124.0 67 94.0
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 4.3e-27 124.0 67 94.0
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 9.6e-27 122.9 67 95.5
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 9.6e-27 122.9 67 95.5
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 2.6e-24 114.8 67 88.1
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 2.6e-24 114.8 67 88.1
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 4.5e-24 114.0 67 88.1
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 2.9e-23 111.3 67 88.1
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 2.9e-23 111.3 67 88.1
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 1.1e-22 109.4 67 86.6
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 1.1e-22 109.4 67 86.6
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 1.1e-22 109.4 67 86.6
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 2.4e-22 108.2 67 85.1
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 4.2e-22 107.5 67 83.6
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 7.1e-22 106.7 67 83.6
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 1.6e-21 105.5 68 83.8
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 1.6e-21 105.5 67 82.1
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 2.1e-21 105.1 68 85.3
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 4.6e-21 104.0 68 83.8
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.0e-20 102.8 68 85.3
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.0e-20 102.8 68 85.3
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 4.2e-14 80.9 72 68.1
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 6.0e-13 77.0 73 65.8
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.0e-12 76.3 74 67.6
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 1.0e-12 76.3 73 64.4
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-12 75.9 54 75.9
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-12 75.9 54 75.9
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.3e-12 75.9 54 75.9
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 1.8e-12 75.5 73 63.0
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 3.9e-12 74.3 74 63.5
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.1e-11 72.8 73 63.0
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.1e-11 72.8 75 61.3
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.1e-11 72.8 72 63.9
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.1e-11 72.8 72 63.9
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.1e-11 72.8 72 63.9
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 3.3e-11 71.2 73 63.0
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 3.3e-11 71.2 63 65.1
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 4.3e-11 70.9 71 63.4
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 4.3e-11 70.9 61 63.9
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 9.6e-11 69.7 68 60.3
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.6e-10 68.9 74 60.8
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.6e-10 68.9 74 60.8
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.7e-10 67.8 68 63.2
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 4.8e-10 67.4 74 60.8
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 4.8e-10 67.4 74 60.8
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 6.2e-10 67.0 74 62.2
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 6.2e-10 67.0 74 62.2
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 6.2e-10 67.0 74 62.2
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 1.1e-09 66.2 53 69.8
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 1.4e-09 65.9 74 59.5
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 1.4e-09 65.9 66 56.1
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 4.0e-09 64.3 66 60.6
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 6.9e-09 63.5 71 59.2
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 6.9e-09 63.5 71 59.2
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 6.9e-09 63.5 65 56.9
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 6.9e-09 63.5 62 58.1
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 6.9e-09 63.5 57 63.2
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 2.6e-08 61.6 71 57.7
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 3.4e-08 61.2 76 52.6
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 1.0e-07 59.7 69 55.1
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 2.9e-07 58.2 60 60.0
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 2.9e-07 58.2 59 55.9
A09p38970 Brassica napus HOM05D007313 ORTHO05D005299 3.8e-07 57.8 74 52.7
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 3.8e-07 57.8 70 52.9
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 4.9e-07 57.4 53 66.0
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.1e-06 56.2 59 55.9
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 2.5e-06 55.1 67 52.2
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 3.2e-06 54.7 59 55.9
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 3.2e-06 54.7 53 58.5
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 3.2e-06 54.7 74 51.4
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 4.2e-06 54.3 69 53.6
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 4.2e-06 54.3 74 51.4
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 5.5e-06 53.9 75 50.7
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 5.5e-06 53.9 71 56.3
BcaC05g26701 Brassica carinata HOM05D007313 ORTHO05D005299 7.1e-06 53.5 66 54.5
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 9.3e-06 53.1 66 54.5


User provided reference genes

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