Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 0.0e+00 1237.2 622 100.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 0.0e+00 1161.0 622 92.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 0.0e+00 1155.6 622 92.0
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 0.0e+00 1155.2 622 92.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 0.0e+00 1152.1 622 91.6
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 0.0e+00 1150.2 622 91.6
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 0.0e+00 1125.9 622 88.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 0.0e+00 1091.6 623 85.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 0.0e+00 1088.2 623 86.4
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 0.0e+00 1081.6 623 85.6
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 5.1e-311 1070.5 623 84.9
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.5e-310 1068.1 623 84.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.9e-263 911.4 687 69.3
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.5e-259 899.4 625 72.2
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 8.9e-236 820.5 619 64.3
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.1e-233 813.5 619 64.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.0e-231 807.0 622 63.2
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 5.6e-230 801.2 621 63.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 2.6e-227 792.3 621 63.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 4.2e-225 785.0 626 62.9
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 7.1e-225 784.3 619 62.8
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.0e-223 778.9 622 61.1
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 4.3e-222 775.0 624 61.9
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.3e-221 773.5 624 61.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 6.2e-221 771.2 623 61.8
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.5e-219 766.5 623 60.8
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 7.6e-219 764.2 623 61.6
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 3.2e-217 758.8 621 61.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-214 750.0 625 61.0
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 3.3e-214 748.8 631 61.3
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.1e-213 746.1 625 60.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.4e-212 743.4 601 61.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.4e-212 742.7 628 60.2
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.9e-212 741.1 628 60.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 6.9e-212 741.1 622 59.6
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 8.4e-210 734.2 628 58.4
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 2.5e-209 732.6 626 60.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 7.1e-209 731.1 623 59.6
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 4.6e-208 728.4 624 59.3
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.0e-207 727.2 624 58.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.8e-207 726.5 624 59.1
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.3e-207 726.1 629 59.5
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 2.3e-207 726.1 620 57.4
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.1e-206 723.8 626 56.9
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.1e-206 723.8 626 59.1
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.9e-206 723.0 621 58.3
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.4e-206 721.1 626 59.1
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 9.6e-206 720.7 621 58.1
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.1e-204 717.2 625 58.6
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.6e-203 712.6 626 58.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 3.4e-203 712.2 625 57.8
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 3.4e-203 712.2 628 56.8
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 3.4e-203 712.2 625 57.1
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 3.4e-203 712.2 657 55.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.3e-202 710.3 628 58.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 5.5e-201 704.9 624 57.1
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 5.5e-201 704.9 624 56.9
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 9.3e-201 704.1 627 55.7
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.6e-200 703.4 631 57.5
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.6e-200 702.2 623 58.1
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 7.9e-200 701.0 624 56.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.0e-199 700.7 624 59.1
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.3e-199 700.3 627 55.7
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 3.3e-198 695.7 621 56.8
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 3.3e-198 695.7 634 56.2
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 9.7e-198 694.1 628 58.0
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.1e-196 689.1 623 56.5
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.1e-196 688.7 624 56.1
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 2.6e-195 686.0 627 57.1
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 5.9e-195 684.9 622 54.5
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.0e-194 684.1 632 56.8
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 2.2e-194 682.9 632 56.0
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.8e-194 682.2 693 52.7
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.2e-193 679.1 624 55.4
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 7.9e-192 674.5 619 57.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.1e-190 670.6 638 53.8
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 3.3e-190 669.1 570 61.2
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.3e-189 667.2 620 55.6
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 3.7e-189 665.6 621 55.2
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 4.1e-188 662.1 621 53.9
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 9.1e-188 661.0 620 53.9
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.5e-187 660.2 624 54.6
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.1e-185 654.1 626 53.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.5e-185 652.9 622 53.9
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.8e-183 646.7 621 53.3
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.4e-182 642.1 624 52.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.8e-181 638.6 660 53.0
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 6.3e-181 638.3 588 56.1
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.4e-180 637.1 623 53.1
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.4e-180 636.3 633 51.3
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.4e-180 636.3 622 52.3
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 5.3e-180 635.2 529 59.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.2e-178 629.8 663 50.5
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.1e-172 609.4 624 52.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 9.1e-172 607.8 530 58.1
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 3.2e-169 599.4 625 49.9
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.9e-161 573.5 640 48.3
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.9e-161 573.5 640 48.3
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.5e-161 572.0 637 48.5
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.3e-154 550.8 623 48.5
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.5e-153 547.4 628 47.0
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.7e-149 533.9 610 47.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 5.4e-148 528.9 621 48.8
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.2e-147 527.7 618 46.1
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 3.0e-146 523.1 487 57.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.8e-142 508.8 629 44.7
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.0e-139 500.4 627 44.2
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.0e-138 498.0 654 43.1
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 8.6e-130 468.4 532 47.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.4e-124 451.1 404 54.7
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.4e-124 449.1 385 57.1
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.8e-120 436.8 581 41.7
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.1e-114 416.0 406 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.2e-108 396.7 475 44.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.1e-108 395.6 409 52.1
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 3.7e-80 303.5 757 28.5
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 4.5e-70 270.0 164 82.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 6.5e-69 266.2 629 31.0
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 4.7e-67 260.0 671 32.2
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.0e-54 218.0 245 46.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-51 208.4 214 49.5
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 4.7e-51 206.8 393 34.6
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.0e-50 205.7 271 42.1
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.2e-50 203.4 110 90.9
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.7e-48 197.2 130 68.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.2e-39 166.0 454 29.1
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.9e-37 161.0 143 57.3
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.6e-30 138.7 131 51.1
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 8.6e-29 132.9 98 68.4
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 4.3e-28 130.6 161 44.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-27 127.9 93 63.4
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.1e-26 124.4 111 52.3
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.5e-25 122.1 180 43.9
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.2e-23 114.4 124 51.6
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 9.5e-20 102.8 172 35.5
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 3.7e-16 90.9 124 41.1
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 6.4e-16 90.1 73 56.2
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.2e-14 85.9 82 56.1
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 7.8e-14 83.2 68 57.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.0e-13 82.8 139 37.4
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 6.6e-13 80.1 71 54.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.1e-12 79.3 233 27.9
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 4.3e-12 77.4 84 48.8
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.8e-11 74.7 37 89.2
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.5e-09 68.9 54 59.3
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.0e-09 68.6 52 61.5
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 6.4e-08 63.5 66 51.5
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.2e-07 61.2 43 62.8
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.4e-07 60.5 56 51.8
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 7.1e-07 60.1 86 43.0


User provided reference genes

Program Settings