Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24300 Brassica carinata HOM05D001350 ORTHO05D001091 2.1e-49 198.7 104 100.0
BcaC04g20779 Brassica carinata HOM05D001350 ORTHO05D001091 1.7e-30 136.0 97 59.8
BolC5t31874H Brassica oleracea HOM05D001350 ORTHO05D001091 3.0e-27 125.2 85 75.3
BcaC02g10623 Brassica carinata HOM05D003757 ORTHO05D004892 3.3e-26 121.7 85 64.7
BolC2t11589H Brassica oleracea HOM05D001350 ORTHO05D001091 6.2e-25 117.5 79 63.3
BraA06t23592Z Brassica rapa HOM05D001350 ORTHO05D001091 8.2e-25 117.1 77 64.9
BolC6t36501H Brassica oleracea HOM05D001350 ORTHO05D001091 3.1e-24 115.2 76 65.8
BolC3t15518H Brassica oleracea HOM05D001350 ORTHO05D001091 2.2e-22 109.0 81 56.8
BolC6t37122H Brassica oleracea HOM05D001350 ORTHO05D001091 1.8e-19 99.4 56 71.4
BolC5t31424H Brassica oleracea HOM05D001350 ORTHO05D001091 3.7e-17 91.7 58 63.8
BolC8t48060H Brassica oleracea HOM05D001350 ORTHO05D001091 1.8e-16 89.4 58 60.3
BolC8t48414H Brassica oleracea HOM05D001350 ORTHO05D001091 3.1e-16 88.6 52 69.2
BolC9t55103H Brassica oleracea HOM05D001350 ORTHO05D001091 9.0e-16 87.0 55 65.5
BolC4t26042H Brassica oleracea HOM05D001350 ORTHO05D001091 1.5e-15 86.3 51 72.5
BolC7t41592H Brassica oleracea HOM05D047596 ORTHO05D043174 2.2e-14 82.4 86 45.3
BraA03t15685Z Brassica rapa HOM05D001350 ORTHO05D001091 6.5e-14 80.9 51 66.7
BolC9t56728H Brassica oleracea HOM05D001350 ORTHO05D001091 4.2e-13 78.2 51 66.7
BolC3t20332H Brassica oleracea HOM05D001350 ORTHO05D001091 6.1e-12 74.3 52 65.4
BolC2t10909H Brassica oleracea HOM05D001350 ORTHO05D001091 7.9e-12 73.9 50 70.0
BolC2t07967H Brassica oleracea HOM05D001350 ORTHO05D001091 1.0e-11 73.6 51 64.7
BcaC01g02466 Brassica carinata HOM05D000003 ORTHO05D009772 8.8e-11 70.5 87 34.5
BraA02t07760Z Brassica rapa HOM05D000003 ORTHO05D001091 2.5e-10 68.9 85 37.6
BolC2t10842H Brassica oleracea HOM05D000003 ORTHO05D001091 9.7e-10 67.0 86 34.9
BcaC07g39692 Brassica carinata HOM05D000003 ORTHO05D001091 1.3e-09 66.6 84 35.7
BcaC01g02492 Brassica carinata HOM05D000003 ORTHO05D001091 2.2e-09 65.9 85 36.5
BcaC06g36308 Brassica carinata HOM05D000003 ORTHO05D001091 2.2e-09 65.9 84 35.7
BolC7t41464H Brassica oleracea HOM05D001350 ORTHO05D001091 2.2e-09 65.9 51 56.9
BolC8t47716H Brassica oleracea HOM05D001350 ORTHO05D001091 2.8e-09 65.5 85 38.8
BraA01t02605Z Brassica rapa HOM05D000003 ORTHO05D001091 8.2e-09 63.9 84 35.7
Aa31sc210G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-08 63.2 85 32.9
Aa31sc588G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-08 63.2 95 28.4
BcaB05g24532 Brassica carinata HOM05D000003 ORTHO05D001091 1.4e-08 63.2 85 32.9
BolC7t42004H Brassica oleracea HOM05D001350 ORTHO05D001091 1.4e-08 63.2 36 75.0
Aa31LG3G7040 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 84 32.1
Aa31LG4G12740 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 84 28.6
BraA07t28530Z Brassica rapa HOM05D047596 ORTHO05D043174 1.8e-08 62.8 86 39.5
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-08 62.0 84 29.8
BraA08t32804Z Brassica rapa HOM05D001350 ORTHO05D001091 4.1e-08 61.6 51 56.9
Aa31LG7G3480 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.3e-08 61.2 84 29.8
BolC3t20008H Brassica oleracea HOM05D001350 ORTHO05D001091 5.3e-08 61.2 36 75.0
BraA03t15302Z Brassica rapa HOM05D001350 ORTHO05D001091 5.3e-08 61.2 34 76.5
BraA02t07593Z Brassica rapa HOM05D001350 ORTHO05D001091 6.9e-08 60.8 34 76.5
SGA_v2.0_scaffold225G43070 Striga asiatica HOM05D000003 ORTHO05D000004 6.9e-08 60.8 86 31.4
BolC2t10365H Brassica oleracea HOM05D001350 ORTHO05D001091 9.1e-08 60.5 36 72.2
SGA_v2.0_scaffold830G53648 Striga asiatica HOM05D023122 ORTHO05D010636 1.5e-07 59.7 86 30.2
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 85 29.4
Aa31sc808G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 93 31.2
BolC3t20295H Brassica oleracea HOM05D001350 ORTHO05D001091 2.6e-07 58.9 34 76.5
Aa31sc174G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.4e-07 58.5 84 28.6
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.4e-07 58.5 82 31.7
Aa31LG10G7630 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.5e-07 58.2 84 29.8
Aa31LG2G18910 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.5e-07 58.2 84 27.4
Aa31LG3G3520 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.5e-07 58.2 85 27.1
BolC7t41660H Brassica oleracea HOM05D001350 ORTHO05D001091 4.5e-07 58.2 34 73.5
Aa31LG10G2340 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 84 27.4
Aa31LG2G18130 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 85 29.4
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.7e-07 57.4 85 27.1
Rhsim01G0174200 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.7e-07 57.4 84 29.8
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-06 56.6 84 25.0
Aa31LG2G16100 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 83 30.1
Aa31LG7G12980 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 85 28.2
Ah.04g151800 Amaranthus hybridus HOM05D000003 ORTHO05D000004 2.2e-06 55.8 103 30.1
BcaC08g47082 Brassica carinata HOM05D000496 ORTHO05D000411 2.2e-06 55.8 87 29.9
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-06 55.5 85 31.8
Aa31LG11G9070 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-06 55.5 101 24.8
Aa31LG3G12630 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-06 55.5 84 29.8
BolC6t37165H Brassica oleracea HOM05D000003 ORTHO05D001091 2.9e-06 55.5 93 33.3
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-06 55.5 86 26.7
BolC2t09987H Brassica oleracea HOM05D001350 ORTHO05D001091 3.8e-06 55.1 34 70.6
BolC3t17352H Brassica oleracea HOM05D001350 ORTHO05D001091 3.8e-06 55.1 36 63.9
Aa31LG8G12860 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.0e-06 54.7 87 31.0
BolC9t56862H Brassica oleracea HOM05D001350 ORTHO05D001091 5.0e-06 54.7 34 73.5
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 84 38.1
PSO063G5400 Papaver somniferum HOM05D000003 ORTHO05D000004 5.0e-06 54.7 84 31.0
PSO675G2713 Papaver somniferum HOM05D000003 ORTHO05D000004 5.0e-06 54.7 89 32.6
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.0e-06 54.7 84 28.6
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.0e-06 54.7 90 28.9
Aa31LG3G6250 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.5e-06 54.3 84 27.4
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.5e-06 54.3 101 26.7
BcaC05g29655 Brassica carinata HOM05D000496 ORTHO05D000411 6.5e-06 54.3 84 32.1
CiPaw.06G052300 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.5e-06 54.3 81 28.4
CANSAT01G2035 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-06 53.9 93 32.3
Lj3C690G12 Lonicera japonica HOM05D000003 ORTHO05D000004 8.5e-06 53.9 86 27.9
PSO223G0058 Papaver somniferum HOM05D000003 ORTHO05D000004 8.5e-06 53.9 85 29.4


User provided reference genes

Program Settings