Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 1.2e-135 486.5 248 100.0
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 1.1e-123 446.8 248 91.9
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 2.0e-122 442.6 247 91.1
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 1.3e-121 439.9 247 91.1
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 2.9e-121 438.7 248 90.3
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 2.9e-121 438.7 248 90.3
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 1.2e-90 337.0 254 70.1
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 2.8e-87 325.9 262 67.6
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 3.7e-84 315.5 256 65.6
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 3.7e-84 315.5 258 67.1
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 6.0e-82 308.1 222 72.1
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 3.0e-81 305.8 258 64.7
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 6.6e-81 304.7 255 64.7
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 1.5e-80 303.5 258 64.7
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 1.5e-80 303.5 258 64.7
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 6.8e-78 294.7 267 61.4
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 1.5e-77 293.5 259 62.2
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 3.4e-77 292.4 232 66.4
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 9.2e-67 257.7 242 58.7
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 2.2e-44 183.3 240 46.2
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 2.6e-21 106.7 219 30.1
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 3.6e-18 96.3 169 33.1
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 2.3e-17 93.6 240 31.2
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 6.7e-17 92.0 169 33.1
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 8.8e-17 91.7 286 29.4
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 1.5e-16 90.9 158 34.2
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 2.0e-16 90.5 158 34.8
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 2.0e-16 90.5 292 25.3
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 3.3e-16 89.7 263 27.8
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 7.4e-16 88.6 157 35.0
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 3.7e-15 86.3 154 34.4
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 4.8e-15 85.9 254 26.4
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.8e-15 85.9 157 33.1
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 4.8e-15 85.9 161 32.9
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 1.1e-14 84.7 204 30.4
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.4e-14 84.3 212 29.2
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 1.4e-14 84.3 202 31.2
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 1.8e-14 84.0 165 30.9
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 2.4e-14 83.6 203 29.6
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 1.2e-13 81.3 196 32.1
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 2.0e-13 80.5 256 27.3
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 3.4e-13 79.7 187 29.4
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 5.9e-13 79.0 159 32.7
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 1.7e-12 77.4 288 25.7
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 2.9e-12 76.6 164 31.1
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 5.0e-12 75.9 214 26.2
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 6.5e-12 75.5 259 25.9
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 1.1e-11 74.7 166 30.7
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.5e-11 73.6 156 30.8
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.5e-11 73.6 156 30.8
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 4.2e-11 72.8 167 29.9
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 5.5e-11 72.4 159 30.2
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 3.6e-10 69.7 215 28.4
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 3.6e-10 69.7 279 25.8
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 4.7e-10 69.3 171 30.4
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 7.9e-10 68.6 157 33.1
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 7.9e-10 68.6 184 29.9
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.8e-09 67.4 224 28.6
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 1.8e-09 67.4 215 27.9
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 1.8e-09 67.4 156 28.2
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 2.3e-09 67.0 154 26.6
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 3.0e-09 66.6 171 30.4
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 3.0e-09 66.6 206 28.2
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 5.1e-09 65.9 160 31.2
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 6.7e-09 65.5 175 29.1
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 8.8e-09 65.1 201 27.9
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 8.8e-09 65.1 201 27.9
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.1e-08 64.7 221 26.2
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 2.0e-08 63.9 122 32.0
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 2.6e-08 63.5 172 26.7
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 3.3e-08 63.2 97 36.1
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 9.7e-08 61.6 296 24.3
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 4.8e-07 59.3 265 25.3
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 6.3e-07 58.9 112 35.7
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 8.2e-07 58.5 274 23.0
Lsat_1_v5_gn_8_149921 Lactuca sativa HOM05D007857 ORTHO05D009355 1.4e-06 57.8 185 28.1
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 1.8e-06 57.4 112 29.5
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 7.0e-06 55.5 99 36.4


User provided reference genes

Program Settings