Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 4.3e-144 514.6 255 100.0
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 5.8e-133 477.6 238 100.0
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.8e-129 466.1 247 92.7
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 2.8e-127 458.8 248 91.9
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 2.8e-127 458.8 248 91.9
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 3.8e-124 448.4 248 91.5
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 3.8e-124 448.4 248 91.5
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 2.5e-123 445.7 248 91.1
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 2.3e-121 439.1 246 87.0
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.9e-120 436.0 246 86.2
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 1.8e-118 429.5 246 84.1
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 8.5e-116 420.6 246 83.7
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 3.6e-114 415.2 247 83.4
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.0e-104 382.9 239 79.9
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 2.4e-102 375.9 247 74.1
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 5.0e-100 368.2 269 74.7
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 5.2e-89 331.6 246 66.7
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 4.5e-69 265.4 252 53.6
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.5e-67 260.4 251 54.6
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 1.6e-66 256.9 268 51.1
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 1.5e-64 250.4 254 50.4
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 2.0e-64 250.0 255 53.3
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.0e-64 250.0 252 52.4
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 4.4e-64 248.8 246 54.1
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.7e-63 246.9 252 51.6
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 6.4e-63 245.0 251 54.2
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.1e-62 244.2 252 51.6
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 3.2e-62 242.7 250 53.2
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 4.1e-62 242.3 249 49.0
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 5.4e-62 241.9 254 51.2
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 9.2e-62 241.1 252 51.2
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.2e-61 240.7 256 51.6
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.2e-61 240.7 246 51.2
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 1.6e-61 240.4 292 47.3
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.0e-61 238.4 246 51.2
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.0e-61 238.4 246 51.2
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.7e-60 236.9 261 45.6
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 1.7e-60 236.9 262 47.7
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 6.6e-60 235.0 253 48.6
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 6.6e-60 235.0 253 48.6
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 8.6e-60 234.6 253 50.2
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.5e-59 233.8 257 49.0
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.5e-59 233.8 257 49.0
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 1.5e-59 233.8 252 48.0
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.5e-59 233.0 253 48.6
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 3.3e-59 232.6 244 46.7
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 3.3e-59 232.6 253 47.8
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 7.3e-59 231.5 252 50.0
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 9.5e-59 231.1 256 50.0
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 9.5e-59 231.1 254 52.0
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 1.6e-58 230.3 276 47.1
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 2.1e-58 229.9 250 48.4
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 3.6e-58 229.2 258 47.3
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 4.7e-58 228.8 247 48.6
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 6.2e-58 228.4 270 45.2
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 1.1e-57 227.6 258 48.8
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.1e-57 227.6 291 44.7
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.3e-57 226.5 258 48.8
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.2e-57 225.3 257 45.5
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 6.8e-57 224.9 258 48.1
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 3.4e-56 222.6 267 46.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 5.8e-56 221.9 245 49.0
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 9.8e-56 221.1 251 47.0
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 1.3e-55 220.7 249 46.6
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.7e-55 220.3 255 47.8
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 1.7e-55 220.3 253 47.4
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 2.2e-55 219.9 257 50.6
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.9e-55 219.5 249 46.2
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 2.9e-55 219.5 247 46.2
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.4e-55 218.4 266 44.0
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 6.4e-55 218.4 255 48.2
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.9e-54 216.9 247 45.3
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 3.2e-54 216.1 264 47.3
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 4.1e-54 215.7 247 48.6
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 6.0e-53 211.8 256 46.9
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-52 210.7 267 45.3
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-52 210.7 247 44.5
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.7e-52 210.3 251 46.6
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 2.3e-52 209.9 251 47.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 3.9e-52 209.1 268 45.9
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 3.9e-52 209.1 245 45.7
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 1.6e-50 203.8 267 41.2
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 1.6e-50 203.8 268 41.0
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 2.8e-50 203.0 288 40.6
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 6.2e-50 201.8 246 47.6
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 6.2e-50 201.8 255 44.7
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 6.2e-50 201.8 255 44.3
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 1.1e-49 201.1 248 44.4
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 1.4e-49 200.7 260 45.4
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 3.1e-49 199.5 250 44.8
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 3.1e-49 199.5 253 41.5
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.2e-48 197.6 249 44.6
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 1.5e-48 197.2 255 42.0
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 1.5e-48 197.2 255 43.5
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 2.0e-48 196.8 266 41.7
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 4.4e-48 195.7 251 46.6
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 5.8e-48 195.3 245 42.0
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 6.4e-47 191.8 259 42.5
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 8.3e-47 191.4 258 39.1
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 4.1e-46 189.1 257 41.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 5.4e-46 188.7 259 41.3
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 7.1e-46 188.3 254 43.7
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 2.1e-45 186.8 281 37.7
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 2.7e-45 186.4 246 41.1
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 6.0e-45 185.3 251 43.4
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 1.3e-44 184.1 258 38.4
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 1.7e-44 183.7 253 43.1
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 3.0e-44 183.0 267 38.6
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 8.6e-44 181.4 249 45.4
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-43 181.0 254 43.3
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 1.9e-43 180.3 249 42.2
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 1.9e-43 180.3 246 41.5
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 2.5e-43 179.9 264 40.9
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 2.5e-43 179.9 254 39.8
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 1.2e-42 177.6 245 43.7
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 2.8e-42 176.4 247 40.1
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 3.6e-42 176.0 255 43.5
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 4.7e-42 175.6 258 40.3
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 1.4e-41 174.1 245 38.4
BcaC05g24388 Brassica carinata HOM05D003253 ORTHO05D002078 2.4e-41 173.3 103 89.3
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 4.0e-41 172.6 280 35.4
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 5.8e-40 168.7 255 40.0
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 5.8e-40 168.7 255 40.0
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 5.4e-38 162.2 209 42.6
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 3.5e-37 159.5 255 38.4
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 2.3e-36 156.8 270 37.4
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.5e-35 153.3 107 63.6
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 3.3e-35 152.9 105 68.6
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 7.3e-35 151.8 247 39.3
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.1e-34 150.2 242 38.0
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 8.1e-34 148.3 95 71.6
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 7.6e-32 141.7 94 67.0
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 2.9e-31 139.8 93 67.7
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.9e-30 137.1 94 67.0
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.4e-30 135.6 102 64.7
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 7.1e-30 135.2 227 41.9
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.6e-29 134.0 94 66.0
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.7e-29 133.3 94 67.0
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.5e-29 132.9 89 69.7
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.6e-29 132.5 108 57.4
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 1.3e-28 131.0 93 62.4
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.0e-28 129.8 111 55.9
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 5.1e-28 129.0 94 66.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.5e-27 127.5 94 63.8
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.3e-27 125.2 107 55.1
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 6.2e-26 122.1 102 58.8
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 1.4e-25 120.9 77 67.5
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.4e-25 120.2 102 57.8
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 5.3e-25 119.0 92 60.9
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 6.9e-25 118.6 92 58.7
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.0e-25 118.2 102 56.9
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.5e-24 115.9 97 57.7
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.8e-24 115.5 94 58.5
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 9.9e-24 114.8 81 61.7
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 9.9e-24 114.8 108 53.7
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 2.2e-23 113.6 201 35.8
CARHR054150 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.4e-22 110.9 100 64.0
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.5e-21 106.3 77 62.3
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.7e-20 102.1 87 52.9
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 1.5e-19 100.9 67 62.7
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.4e-17 94.4 113 42.5
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.5e-16 89.4 73 54.8
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 7.6e-16 88.6 69 59.4
Atru.chr4.2451 Acer truncatum HOM05D003253 ORTHO05D002078 1.0e-15 88.2 123 39.0
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-14 84.3 68 54.4
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.1e-14 82.0 51 68.6
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.0e-13 79.0 73 49.3
TPR.G5474 Trifolium pratense HOM05D003253 ORTHO05D002078 1.3e-12 77.8 98 43.9
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 2.1e-10 70.5 111 34.2
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.8e-10 69.3 69 44.9
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.2e-10 68.6 60 53.3
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.8e-09 67.4 112 31.2
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.8e-09 67.4 112 31.2
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 9.0e-09 65.1 96 42.7
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.5e-08 64.3 50 54.0
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 7.6e-08 62.0 45 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 6.5e-07 58.9 106 34.9
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.2e-06 55.5 46 54.3


User provided reference genes

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