Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 3.2e-89 331.6 160 100.0
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.8e-15 86.7 88 61.4
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.8e-15 86.7 88 61.4
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.8e-15 86.7 88 61.4
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.8e-15 86.7 88 61.4
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-15 86.3 88 61.4
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-15 86.3 88 61.4
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-15 86.3 88 61.4
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-15 86.3 88 61.4
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 2.4e-15 86.3 88 61.4
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 3.1e-15 85.9 87 62.1
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 3.1e-15 85.9 87 62.1
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 3.1e-15 85.9 87 62.1
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 9.0e-15 84.3 88 60.2
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 4.5e-14 82.0 88 59.1
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 5.8e-14 81.6 87 59.8
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 5.8e-14 81.6 87 59.8
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 1.7e-13 80.1 88 58.0
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 4.2e-12 75.5 88 54.5
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 4.6e-11 72.0 86 53.5
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 3.9e-10 68.9 86 52.3
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 3.9e-10 68.9 88 51.1
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 8.7e-10 67.8 87 51.7
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 8.7e-10 67.8 84 46.4
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 8.7e-10 67.8 84 47.6
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 8.7e-10 67.8 86 52.3
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.1e-09 67.4 84 47.6
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.1e-09 67.4 87 51.7
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.1e-09 67.4 87 51.7
BraA07t31022Z Brassica rapa HOM05D040989 ORTHO05D043250 1.5e-09 67.0 60 60.0
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.5e-09 67.0 87 51.7
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.5e-09 67.0 83 48.2
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.5e-09 67.0 84 47.6
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.5e-09 67.0 86 50.0
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 1.9e-09 66.6 83 47.0
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.9e-09 66.6 84 46.4
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.9e-09 66.6 84 47.6
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 1.9e-09 66.6 85 47.1
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 1.9e-09 66.6 86 51.2
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 2.5e-09 66.2 86 48.8
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.5e-09 66.2 84 46.4
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 2.5e-09 66.2 86 47.7
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.5e-09 66.2 87 49.4
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 2.5e-09 66.2 87 50.6
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 3.3e-09 65.9 83 48.2
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 4.3e-09 65.5 86 47.7
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 4.3e-09 65.5 88 47.7
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 4.3e-09 65.5 120 40.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 4.3e-09 65.5 88 47.7
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 4.3e-09 65.5 86 46.5
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 4.3e-09 65.5 84 46.4
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 4.3e-09 65.5 87 48.3
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 4.3e-09 65.5 87 48.3
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 4.3e-09 65.5 87 48.3
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 5.7e-09 65.1 87 49.4
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 5.7e-09 65.1 84 45.2
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 5.7e-09 65.1 87 48.3
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 7.4e-09 64.7 86 48.8
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 7.4e-09 64.7 86 47.7
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 7.4e-09 64.7 86 47.7
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 9.7e-09 64.3 83 47.0
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 9.7e-09 64.3 83 47.0
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 9.7e-09 64.3 83 47.0
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 9.7e-09 64.3 83 47.0
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 9.7e-09 64.3 86 47.7
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 9.7e-09 64.3 86 46.5
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 9.7e-09 64.3 84 44.0
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 9.7e-09 64.3 87 47.1
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.3e-08 63.9 87 48.3
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.3e-08 63.9 88 47.7
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.3e-08 63.9 86 46.5
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 1.6e-08 63.5 87 48.3
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 1.6e-08 63.5 86 45.3
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 2.2e-08 63.2 95 40.0
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.2e-08 63.2 84 46.4
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 2.8e-08 62.8 86 48.8
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.8e-08 62.8 84 45.2
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 3.7e-08 62.4 83 44.6
BolC6t39147H Brassica oleracea HOM05D040989 ORTHO05D106598 3.7e-08 62.4 62 56.5
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.7e-08 62.4 87 47.1
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 4.8e-08 62.0 86 50.0
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 4.8e-08 62.0 86 50.0
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 4.8e-08 62.0 87 48.3
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 4.8e-08 62.0 86 47.7
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 6.3e-08 61.6 86 41.9
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 6.3e-08 61.6 83 44.6
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 6.3e-08 61.6 88 44.3
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 6.3e-08 61.6 86 45.3
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 6.3e-08 61.6 86 45.3
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 8.2e-08 61.2 86 51.2
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 8.2e-08 61.2 83 42.2
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 8.2e-08 61.2 84 44.0
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.1e-07 60.8 86 47.7
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.1e-07 60.8 83 44.6
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-07 60.5 84 42.9
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-07 60.5 84 42.9
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.4e-07 60.5 84 45.2
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.4e-07 60.5 86 46.5
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 1.4e-07 60.5 86 44.2
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 1.8e-07 60.1 91 48.4
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 1.8e-07 60.1 86 46.5
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 1.8e-07 60.1 83 43.4
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.4e-07 59.7 83 41.0
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 2.4e-07 59.7 84 41.7
BolC2t08442H Brassica oleracea HOM05D040989 ORTHO05D043250 3.1e-07 59.3 62 61.3
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 3.1e-07 59.3 89 41.6
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 5.3e-07 58.5 128 33.6
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 5.3e-07 58.5 83 45.8
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 1.2e-06 57.4 82 48.8
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 1.5e-06 57.0 82 41.5
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.6e-06 56.2 79 44.3
Aa31LG3G5740 Aethionema arabicum HOM05D000002 ORTHO05D002065 4.5e-06 55.5 41 75.6
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 4.5e-06 55.5 93 39.8


User provided reference genes

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