Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 8.7e-78 293.5 142 100.0
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 96.5
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 96.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 96.5
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 5.3e-75 284.3 142 96.5
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.0e-74 282.3 142 95.8
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.5e-74 281.2 142 95.1
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.5e-74 281.2 142 95.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.2e-73 278.9 142 93.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.2e-73 278.9 142 93.7
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 6.4e-73 277.3 142 93.7
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-72 276.6 142 93.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 3.2e-72 275.0 142 93.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 3.2e-72 275.0 142 93.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 3.2e-72 275.0 142 93.0
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 9.3e-72 273.5 142 93.0
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.6e-71 272.7 142 92.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.6e-71 272.7 142 92.3
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 6.7e-70 267.3 142 88.7
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.6e-69 264.2 142 90.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.8e-68 261.9 142 86.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.7e-68 261.5 142 88.0
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.4e-67 258.8 142 86.6
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 82.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 8.4e-65 250.4 142 83.1
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.4e-64 249.6 142 81.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.4e-64 249.6 142 81.7
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.2e-64 248.1 142 81.7
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 81.7
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 82.4
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.9e-61 239.2 191 64.9
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.1e-60 235.7 142 74.6
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 74.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 75.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 74.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 73.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 73.9
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 73.2
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.6e-58 228.8 142 73.2
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 71.1
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.6e-58 227.3 142 73.2
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 71.8
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 70.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 73.2
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.1
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 2.9e-57 225.3 140 73.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 73.2
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 72.5
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 72.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 8.5e-57 223.8 141 74.5
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 71.8
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.9e-56 222.6 141 70.2
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 72.5
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 141 70.9
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 4.2e-56 221.5 139 74.1
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 71.1
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 71.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.1
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 72.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 72.5
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 70.4
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 71.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 71.8
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 70.4
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 71.1
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 70.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.3e-54 216.5 142 69.0
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 70.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.9e-54 214.9 141 70.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 70.4
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 6.7e-54 214.2 141 69.5
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 69.7
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 68.3
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 68.3
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.9e-53 212.6 142 69.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.5e-53 212.2 138 71.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.3e-53 211.8 138 70.3
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 4.3e-53 211.5 141 68.8
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.3e-53 211.5 136 69.9
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 5.7e-53 211.1 138 70.3
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 70.2
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 67.4
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.3e-52 207.6 138 70.3
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 141 67.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 141 67.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.1e-51 206.8 142 67.6
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 66.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.4e-51 205.7 135 71.1
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 3.1e-51 205.3 138 71.0
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 66.9
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.1e-51 204.9 142 68.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 6.9e-51 204.1 138 70.3
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 9.1e-51 203.8 138 69.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.2e-50 203.4 193 53.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.2e-50 203.4 193 53.9
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.5e-50 203.0 141 65.2
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 64.3
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 71.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.6e-50 202.2 139 66.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 64.3
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.4e-50 201.8 170 58.2
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 64.3
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 67.4
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.0e-49 200.3 142 66.9
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 3.8e-49 198.4 135 68.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.5e-49 197.6 154 61.0
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 66.2
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.4e-48 196.4 141 67.4
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.4e-48 196.4 140 62.1
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.4e-48 196.4 141 66.7
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.5e-48 195.7 137 63.5
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 4.2e-48 194.9 141 65.2
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 5.5e-48 194.5 138 66.7
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.2e-48 194.1 137 67.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 7.2e-48 194.1 142 61.3
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 7.2e-48 194.1 142 64.1
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.2e-47 193.4 141 66.0
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.6e-47 193.0 142 64.8
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.1e-47 191.0 142 62.0
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.1e-47 191.0 142 64.1
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 7.9e-47 190.7 143 64.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.9e-47 190.7 142 62.7
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 63.4
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 62.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 63.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 61.3
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.9e-46 188.3 138 63.8
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 5.1e-46 188.0 138 63.8
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 3.3e-45 185.3 140 65.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 4.4e-45 184.9 142 62.0
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.3e-44 183.3 135 63.0
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 3.7e-44 181.8 138 63.8
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 4.8e-44 181.4 117 70.9
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 2.4e-43 179.1 157 56.7
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 9.1e-43 177.2 140 62.1
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.2e-42 176.8 141 62.4
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.0e-42 176.0 142 59.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 7.7e-42 174.1 175 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 1.0e-38 163.7 140 55.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 8.8e-38 160.6 108 68.5
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 7.4e-37 157.5 125 60.8
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-35 153.3 141 54.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 2.4e-35 152.5 141 54.6
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.1e-35 151.8 137 52.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.2e-34 150.2 137 51.8
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.5e-34 148.3 138 52.9
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 7.7e-34 147.5 142 50.0
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 8.5e-33 144.1 285 32.3
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.5e-32 142.5 129 51.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.2e-32 142.1 129 51.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 7.5e-29 131.0 124 50.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 3.8e-25 118.6 109 59.6
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.5e-25 117.9 73 69.9
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.5e-24 115.9 127 45.7
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.1e-23 112.8 80 66.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 4.7e-23 111.7 80 66.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.8e-22 109.8 112 58.0
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 6.3e-20 101.3 67 67.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-19 100.5 109 48.6
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-19 100.5 109 48.6
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-19 100.5 109 48.6
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 2.4e-19 99.4 115 53.9
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.4e-19 99.4 67 67.2
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 2.7e-18 95.9 121 42.1
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 6.5e-17 91.3 87 52.9
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 2.5e-16 89.4 59 64.4
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 2.5e-16 89.4 59 64.4
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 3.3e-16 89.0 116 39.7
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.0e-15 84.3 77 54.5
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.0e-14 82.0 68 55.9
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 2.0e-13 79.7 77 48.1
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 8.3e-12 74.3 68 51.5
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.0e-09 67.4 39 66.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-09 67.0 42 71.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 3.8e-09 65.5 43 67.4
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 5.0e-09 65.1 71 52.1
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 6.6e-09 64.7 32 90.6
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-08 63.9 40 72.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 6.1e-07 58.2 124 35.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 3.0e-06 55.8 34 70.6
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 4.0e-06 55.5 62 46.8
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 5.2e-06 55.1 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.8e-06 54.7 36 66.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 6.8e-06 54.7 34 67.6


User provided reference genes

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