Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 5.0e-246 854.0 426 100.0
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 5.2e-211 737.6 432 87.7
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.2e-210 736.5 435 87.1
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.6e-207 726.1 436 86.0
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-207 724.5 435 86.0
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 4.6e-207 724.5 435 86.0
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 7.1e-176 620.9 396 81.8
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 7.4e-165 584.3 438 73.5
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.3e-161 573.5 414 75.8
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.9e-157 559.7 436 72.2
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.9e-153 545.8 414 73.9
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 6.3e-140 501.5 340 77.6
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 4.4e-133 478.8 466 61.6
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 2.8e-132 476.1 454 61.5
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.7e-132 475.7 463 60.7
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 7.0e-131 471.5 444 59.9
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.5e-130 469.2 459 59.7
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.7e-129 466.8 460 59.8
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.2e-129 466.5 457 59.7
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.9e-128 463.4 445 58.9
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.9e-128 463.4 438 62.1
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 5.5e-128 461.8 445 58.4
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 5.5e-128 461.8 440 59.1
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.6e-127 460.3 452 59.1
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.7e-127 459.5 440 60.5
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 1.4e-126 457.2 438 59.1
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 1.4e-126 457.2 438 59.1
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 9.8e-125 451.1 479 57.4
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 4.9e-100 369.0 378 55.0
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.1e-99 367.9 443 52.1
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 7.8e-98 361.7 430 51.6
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 2.3e-97 360.1 450 50.9
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 3.0e-97 359.8 380 54.7
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 6.6e-97 358.6 360 54.7
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 6.6e-97 358.6 443 50.8
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.1e-96 357.8 436 49.8
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.5e-96 357.5 430 49.8
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 2.5e-96 356.7 392 51.8
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.3e-96 356.3 431 49.2
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 5.6e-96 355.5 443 48.3
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 7.3e-96 355.1 381 54.6
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.4e-94 350.9 399 51.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.8e-94 350.5 458 49.8
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.8e-94 350.5 458 49.8
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 1.8e-94 350.5 400 51.8
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 8.9e-94 348.2 451 48.3
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.5e-93 347.4 442 48.0
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 2.0e-93 347.1 416 50.5
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.3e-92 344.4 442 48.0
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.3e-92 344.4 431 49.0
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 3.7e-92 342.8 458 48.5
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 6.4e-92 342.0 467 48.0
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 6.4e-92 342.0 383 52.7
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 4.1e-91 339.3 383 49.6
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 5.4e-91 339.0 443 48.8
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 5.4e-91 339.0 362 53.3
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 7.1e-91 338.6 362 52.5
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 9.2e-91 338.2 444 47.7
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 2.1e-90 337.0 420 48.8
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 2.7e-90 336.7 453 47.2
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 3.5e-90 336.3 426 46.0
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.5e-90 336.3 412 49.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 7.8e-90 335.1 299 60.2
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 7.8e-90 335.1 455 48.4
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 1.0e-89 334.7 348 52.6
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.0e-89 334.7 421 50.4
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.7e-89 334.0 439 48.1
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.7e-89 334.0 392 49.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.3e-89 333.6 475 47.6
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.9e-89 332.8 340 54.1
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 3.9e-89 332.8 440 47.7
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.1e-88 331.3 414 49.5
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 1.9e-88 330.5 369 51.8
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.9e-88 330.5 358 55.3
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.9e-88 330.5 432 47.0
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.5e-88 330.1 405 48.4
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 4.3e-88 329.3 414 48.8
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.3e-88 329.3 424 48.1
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 4.3e-88 329.3 420 48.3
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 4.3e-88 329.3 379 49.1
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 9.5e-88 328.2 326 53.1
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.2e-87 327.8 379 50.9
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 1.6e-87 327.4 414 47.1
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 2.1e-87 327.0 420 47.6
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 3.6e-87 326.2 394 48.2
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.7e-87 325.9 373 51.2
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.8e-86 323.9 364 51.1
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 5.2e-86 322.4 380 51.8
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 5.2e-86 322.4 344 53.5
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.2e-85 321.2 309 56.6
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.2e-85 321.2 454 45.4
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 1.5e-85 320.9 330 53.3
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.0e-85 320.5 401 46.4
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.6e-85 320.1 363 52.1
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 5.8e-85 318.9 402 47.0
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 7.6e-85 318.5 433 46.9
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.7e-84 317.4 431 47.6
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 3.8e-84 316.2 381 51.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 8.4e-84 315.1 388 47.4
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 5.4e-83 312.4 399 45.6
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 1.0e-81 308.1 441 44.2
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 1.3e-81 307.8 409 45.2
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 6.6e-81 305.4 520 41.2
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.6e-80 301.6 380 47.1
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.6e-79 300.8 367 46.6
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.1e-79 300.4 370 46.8
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 4.7e-79 299.3 418 45.2
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.1e-78 298.1 337 49.0
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.8e-78 297.4 413 44.6
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.3e-78 295.8 381 46.2
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.6e-77 293.5 291 54.0
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 5.8e-77 292.4 390 46.2
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 2.2e-76 290.4 356 48.6
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 9.3e-75 285.0 333 52.3
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 2.3e-73 280.4 449 42.5
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.8e-70 270.8 510 37.5
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.7e-68 264.2 315 48.3
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 2.4e-67 260.4 326 46.0
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.3e-65 254.6 351 44.7
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.7e-65 252.3 344 45.9
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 8.7e-65 251.9 318 47.2
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 5.6e-64 249.2 361 43.2
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 3.7e-63 246.5 440 38.4
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.1e-62 245.0 351 43.6
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.5e-61 239.6 373 41.8
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.4e-60 235.7 281 50.9
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.6e-58 229.6 279 48.4
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.0e-57 228.4 268 49.6
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.1e-56 224.9 369 40.1
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.3e-56 223.4 215 55.8
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 2.8e-55 220.3 310 44.8
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 8.4e-52 208.8 368 40.8
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.1e-49 199.5 177 58.8
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 6.3e-47 192.6 177 57.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.4e-45 186.8 167 58.7
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.4e-43 181.4 368 37.5
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 5.5e-43 179.5 165 58.8
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.7e-36 157.9 394 33.0
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 8.5e-28 129.0 129 51.9
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 6.1e-26 122.9 367 31.1
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.3e-25 120.9 203 36.9
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 6.3e-23 112.8 382 29.3
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 7.7e-21 105.9 156 45.5
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 3.8e-20 103.6 457 26.7
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.5e-16 91.7 122 41.8
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 2.2e-15 87.8 159 40.9
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 6.3e-15 86.3 144 44.4
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 1.5e-08 65.1 154 35.1
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 4.1e-06 57.0 109 36.7


User provided reference genes

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