Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24246 Brassica carinata HOM05D028788 ORTHO05D024317 2.8e-58 228.4 117 100.0
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 8.6e-31 137.1 72 93.1
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 1.9e-30 136.0 72 90.3
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 2.5e-30 135.6 72 91.7
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 2.5e-30 135.6 72 91.7
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 3.3e-30 135.2 72 91.7
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 4.3e-30 134.8 72 91.7
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 5.6e-30 134.4 72 88.9
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 5.6e-30 134.4 72 88.9
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 7.3e-30 134.0 72 90.3
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 7.3e-30 134.0 72 90.3
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 7.3e-30 134.0 72 90.3
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 7.3e-30 134.0 72 88.9
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 3.6e-29 131.7 72 86.1
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 3.6e-29 131.7 72 86.1
TAR625G1357 Trochodendron aralioides HOM05D000278 ORTHO05D004673 3.6e-29 131.7 72 86.1
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 4.7e-29 131.3 72 86.1
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 86.1
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 84.7
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 86.1
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 86.1
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 86.1
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 6.1e-29 131.0 72 86.1
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 8.0e-29 130.6 72 86.1
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.0e-28 130.2 72 84.7
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.0e-28 130.2 72 84.7
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 1.0e-28 130.2 72 84.7
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 1.4e-28 129.8 72 84.7
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.4e-28 129.8 72 86.1
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.4e-28 129.8 72 86.1
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 84.7
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 84.7
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 84.7
Psat3g130480 Pisum sativum HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 84.7
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 83.3
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 1.8e-28 129.4 72 84.7
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 83.3
HPP92_017263 Vanilla planifolia HOM05D000278 ORTHO05D004673 2.3e-28 129.0 72 84.7
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 3.0e-28 128.6 72 83.3
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 3.0e-28 128.6 72 83.3
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 3.0e-28 128.6 72 83.3
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 81.9
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 81.9
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 83.3
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 83.3
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 83.3
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 83.3
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 83.3
Sc09g0003140 Simmondsia chinensis HOM05D000278 ORTHO05D004673 4.0e-28 128.3 72 84.7
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 5.2e-28 127.9 72 84.7
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 5.2e-28 127.9 72 84.7
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 5.2e-28 127.9 72 83.3
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 5.2e-28 127.9 72 84.7
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 5.2e-28 127.9 72 83.3
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 86.1
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 83.3
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 81.9
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 83.3
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 81.9
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 83.3
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 83.3
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 6.8e-28 127.5 72 81.9
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 81.9
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 81.9
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 81.9
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 81.9
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 81.9
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 83.3
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 8.9e-28 127.1 72 83.3
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 1.2e-27 126.7 72 81.9
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 1.2e-27 126.7 72 81.9
CiPaw.08G070800 Carya illinoinensis HOM05D000278 ORTHO05D004673 1.2e-27 126.7 72 81.9
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 1.2e-27 126.7 72 81.9
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 1.2e-27 126.7 72 81.9
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 1.5e-27 126.3 72 81.9
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.5e-27 126.3 72 83.3
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 1.5e-27 126.3 72 83.3
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 2.0e-27 125.9 72 81.9
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 2.0e-27 125.9 72 81.9
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 2.0e-27 125.9 72 80.6
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 2.0e-27 125.9 72 81.9
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 2.0e-27 125.9 72 81.9
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 2.6e-27 125.6 72 81.9
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 2.6e-27 125.6 72 80.6
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 2.6e-27 125.6 72 81.9
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 2.6e-27 125.6 72 81.9
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 81.9
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 81.9
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 83.3
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 3.4e-27 125.2 72 80.6
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 4.4e-27 124.8 72 80.6
Zm00001eb333890 Zea mays HOM05D000278 ORTHO05D004673 4.4e-27 124.8 72 79.2
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 5.8e-27 124.4 72 79.2
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 5.8e-27 124.4 72 80.6
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 5.8e-27 124.4 72 83.3
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 7.5e-27 124.0 72 79.2
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 7.5e-27 124.0 72 79.2
AagrBONN_evm.TU.Sc2ySwM_228.4022 Anthoceros agrestis HOM05D000278 ORTHO05D004673 9.8e-27 123.6 72 79.2
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 9.8e-27 123.6 72 79.2
Duzib133G0408 Durio zibethinus HOM05D000278 ORTHO05D004673 1.3e-26 123.2 72 80.6
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 1.3e-26 123.2 72 79.2
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 79.2
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 79.2
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 79.2
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 79.2
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 80.6
VMungo1127G1082 Vigna mungo HOM05D000278 ORTHO05D004673 1.7e-26 122.9 72 79.2
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 2.2e-26 122.5 72 80.6
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 2.2e-26 122.5 72 80.6
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 3.7e-26 121.7 72 77.8
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 3.7e-26 121.7 72 77.8
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 3.7e-26 121.7 72 77.8
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 1.9e-25 119.4 72 75.0
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 5.4e-25 117.9 72 75.0
CSS0001931 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 7.8e-24 114.0 72 76.4
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 1.5e-22 109.8 72 69.4
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 3.3e-22 108.6 64 78.1
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 4.3e-22 108.2 72 68.1
Haze_26336 Corylus avellana HOM05D000278 ORTHO05D004673 3.6e-21 105.1 72 68.1
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 2.3e-20 102.4 60 76.7
MCO14G488 Micromonas commoda HOM05D000278 ORTHO05D004673 2.3e-20 102.4 72 65.3
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 3.4e-19 98.6 56 78.6
Zm00001eb130780 Zea mays HOM05D000278 ORTHO05D004673 4.4e-19 98.2 59 76.3
MBI15_g40394_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D010488 1.1e-17 93.6 56 76.8
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 5.1e-15 84.7 45 80.0
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 8.6e-15 84.0 45 82.2
PGSC0003DMG400007161 Solanum tuberosum HOM05D000278 ORTHO05D024317 1.5e-14 83.2 59 62.7
Nn2g11831 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.4e-12 76.6 45 73.3
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 2.6e-11 72.4 39 84.6
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 2.4e-09 65.9 72 51.4
Cc10_g11400 Coffea canephora HOM05D000278 ORTHO05D004673 1.6e-08 63.2 44 65.9
C01p18250 Brassica napus HOM05D028788 ORTHO05D024317 2.7e-08 62.4 34 97.1
BolC1t01750H Brassica oleracea HOM05D028788 ORTHO05D024317 2.7e-08 62.4 34 97.1
Hma1.2p1_0149F.1_g066520 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 1.1e-06 57.0 72 45.8
C01p29970 Brassica napus HOM05D028788 ORTHO05D024317 1.5e-06 56.6 35 88.6


User provided reference genes

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