Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-126 456.8 239 100.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 8.5e-110 400.6 239 90.0
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.4e-109 399.8 239 89.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.2e-109 398.3 239 89.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.1e-108 396.0 239 90.0
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.1e-108 396.0 239 90.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.1e-104 381.7 243 86.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 3.0e-99 365.5 226 86.3
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 8.6e-86 320.9 231 76.2
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.5e-85 319.3 236 72.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 9.5e-85 317.4 225 74.2
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.1e-84 316.2 201 79.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 8.6e-78 294.3 237 67.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.0e-75 287.3 224 66.5
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.6e-68 263.5 198 67.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.1e-68 263.1 214 65.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.6e-68 262.3 185 73.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.7e-68 261.9 181 70.7
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 3.1e-67 259.2 185 70.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.0e-67 258.8 220 63.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.2e-66 257.3 246 58.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.2e-66 257.3 183 71.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.0e-66 256.5 196 65.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.0e-66 256.5 186 72.0
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 5.8e-66 255.0 184 68.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.3e-65 253.8 214 62.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.2e-65 253.1 180 68.9
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 4.9e-65 251.9 184 68.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.4e-65 251.5 150 81.3
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 8.3e-65 251.1 182 69.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-64 250.8 181 69.6
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.1e-64 250.8 220 60.0
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-64 250.8 177 70.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.4e-64 250.4 186 67.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.4e-64 250.4 186 67.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.4e-64 250.4 181 70.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.9e-64 250.0 181 68.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.4e-64 249.6 189 65.1
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.4e-64 249.6 189 65.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.4e-64 249.6 186 67.7
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.2e-64 249.2 224 59.4
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.2e-64 249.2 219 61.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.1e-64 248.8 191 65.4
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.2e-63 247.3 179 68.7
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.2e-63 247.3 187 64.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-63 247.3 224 58.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-63 247.3 224 58.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-63 246.9 191 65.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-63 246.9 181 67.4
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-63 246.5 183 67.8
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.0e-63 246.5 193 65.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.0e-63 246.5 228 57.0
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.0e-63 246.5 222 59.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.7e-63 246.1 185 65.4
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.7e-63 246.1 194 64.9
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.5e-63 245.7 205 63.4
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 4.6e-63 245.4 186 65.6
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.6e-63 245.4 178 69.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 6.0e-63 245.0 190 65.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 6.0e-63 245.0 183 65.6
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 6.0e-63 245.0 188 66.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.8e-63 244.6 195 64.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 7.8e-63 244.6 187 64.2
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.0e-62 244.2 178 66.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.0e-62 244.2 215 59.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.0e-62 244.2 208 61.5
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-62 243.8 234 59.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-62 243.8 186 67.7
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-62 243.4 205 61.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-62 243.4 178 69.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.9e-62 242.3 183 65.6
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 5.0e-62 241.9 185 64.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 5.0e-62 241.9 193 63.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.0e-62 241.9 181 65.2
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.0e-62 241.9 190 62.1
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.1e-61 240.7 240 55.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.9e-61 240.0 180 66.1
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.9e-61 240.0 206 62.6
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.3e-61 239.2 191 60.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 5.6e-61 238.4 214 58.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.6e-61 238.4 189 63.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.6e-61 238.4 189 61.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 7.3e-61 238.0 183 66.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.2e-60 237.3 211 61.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.1e-60 236.5 205 57.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.8e-60 236.1 182 64.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.8e-60 236.1 202 57.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 6.2e-60 235.0 147 77.6
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 6.2e-60 235.0 189 61.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-59 234.2 185 65.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.1e-59 234.2 206 59.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-59 233.4 181 65.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.1e-59 232.6 180 63.3
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 8.9e-59 231.1 179 65.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 8.9e-59 231.1 146 76.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.0e-58 229.9 157 71.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.6e-58 229.6 146 76.0
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.4e-58 228.8 188 61.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.4e-58 228.8 177 65.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 9.9e-58 227.6 148 73.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.7e-57 226.9 219 58.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.7e-57 225.7 147 75.5
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 4.9e-57 225.3 156 72.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.9e-56 223.4 140 76.4
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.4e-56 223.0 168 66.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-56 223.0 147 73.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.2e-56 222.6 165 70.3
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.4e-56 221.9 147 74.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.4e-56 221.9 161 65.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.6e-55 220.3 146 71.9
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.1e-55 219.9 144 73.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.7e-55 219.5 151 70.9
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.6e-55 218.8 173 65.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-53 214.2 176 60.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.9e-53 213.4 176 60.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.3e-53 212.2 176 60.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-51 205.7 205 53.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 8.9e-51 204.5 224 51.3
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.5e-50 203.8 221 50.2
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 3.4e-50 202.6 177 57.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 9.9e-50 201.1 121 77.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 8.4e-49 198.0 191 57.1
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.7e-46 190.3 155 62.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.0e-46 189.5 144 61.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.6e-46 188.3 141 69.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.8e-44 183.0 176 52.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 2.8e-44 183.0 142 57.0
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.2e-43 178.7 143 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.9e-43 178.3 140 60.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.7e-41 173.7 140 63.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-41 172.9 191 51.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.9e-41 172.9 139 65.5
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.4e-40 169.9 141 66.0
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.1e-40 168.3 128 66.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-39 167.5 185 52.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-39 167.5 174 51.1
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.0e-34 150.2 149 55.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 4.5e-34 149.1 132 57.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.5e-34 149.1 215 42.3
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 8.4e-33 144.8 193 43.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 7.1e-32 141.7 199 44.7
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.4e-27 127.5 123 55.3
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-26 123.6 160 48.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.4e-25 118.6 110 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.1e-21 107.8 79 65.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.5e-18 95.9 141 36.2
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-16 90.9 148 34.5
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.6e-15 87.4 131 34.4
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.2e-12 77.0 137 35.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.3e-11 72.4 152 27.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.2e-10 71.2 83 48.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.0e-10 70.5 120 31.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 5.0e-09 65.9 127 30.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.4e-08 64.3 162 31.5
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-06 57.4 70 40.0


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