Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24206 Brassica carinata HOM05D000260 ORTHO05D000318 1.4e-86 322.8 153 100.0
BcaC03g14781 Brassica carinata HOM05D000072 ORTHO05D000026 1.1e-46 190.3 149 61.7
BolC2t08377H Brassica oleracea HOM05D000072 ORTHO05D000026 1.1e-46 190.3 149 61.7
C08p43420 Brassica napus HOM05D000260 ORTHO05D000318 7.7e-40 167.5 149 54.4
Sp1g16340 Schrenkiella parvula HOM05D000260 ORTHO05D000318 2.3e-39 166.0 153 52.9
BolC8t51890H Brassica oleracea HOM05D000260 ORTHO05D000318 3.8e-39 165.2 149 53.7
C05p16650 Brassica napus HOM05D000260 ORTHO05D000318 1.5e-38 163.3 151 55.0
BcaC05g25732 Brassica carinata HOM05D000260 ORTHO05D000318 1.9e-38 162.9 151 54.3
A09p59970 Brassica napus HOM05D000260 ORTHO05D000318 9.5e-38 160.6 149 51.7
BolC5t30365H Brassica oleracea HOM05D000260 ORTHO05D000318 9.5e-38 160.6 148 54.7
BraA09t41367Z Brassica rapa HOM05D000260 ORTHO05D000318 9.5e-38 160.6 149 51.7
BcaB07g31847 Brassica carinata HOM05D000260 ORTHO05D000318 4.0e-36 155.2 144 50.0
CARHR018980 Cardamine hirsuta HOM05D000260 ORTHO05D000318 2.6e-35 152.5 144 51.4
Carub.0002s1317 Capsella rubella HOM05D000072 ORTHO05D000026 6.4e-34 147.9 147 50.3
BcaC05g25731 Brassica carinata HOM05D000260 ORTHO05D000318 3.2e-33 145.6 149 49.7
BolC5t30364H Brassica oleracea HOM05D000260 ORTHO05D000318 3.2e-33 145.6 149 49.7
Carub.0001s1801 Capsella rubella HOM05D000260 ORTHO05D000318 5.4e-33 144.8 143 49.0
C05p16640 Brassica napus HOM05D000260 ORTHO05D000318 9.2e-33 144.1 149 49.0
AL1G30800 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 1.9e-30 136.3 148 45.3
BraA06t24568Z Brassica rapa HOM05D000260 ORTHO05D000318 2.5e-30 136.0 146 47.9
Thhalv10007020m.g Eutrema salsugineum HOM05D000260 ORTHO05D000318 8.0e-29 131.0 152 48.0
Aa31LG7G3070 Aethionema arabicum HOM05D000260 ORTHO05D000318 3.4e-27 125.6 147 45.6
BcaC07g41332 Brassica carinata HOM05D000260 ORTHO05D000318 4.4e-27 125.2 149 45.0
AT1G18390 Arabidopsis thaliana HOM05D000260 ORTHO05D000318 6.4e-26 121.3 145 44.1
AL2G25340 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 1.9e-25 119.8 149 45.0
AT1G67025 Arabidopsis thaliana HOM05D000260 ORTHO05D000318 3.3e-22 109.0 152 42.1
A06p14430 Brassica napus HOM05D000260 ORTHO05D000318 1.2e-21 107.1 130 45.4
Thhalv10002354m.g Eutrema salsugineum HOM05D000072 ORTHO05D000026 6.2e-21 104.8 145 40.7
MD06G1218500 Malus domestica HOM05D000260 ORTHO05D000318 6.4e-10 68.2 151 29.8
MD14G1228700 Malus domestica HOM05D000260 ORTHO05D000318 1.4e-09 67.0 136 30.1
RcHm_v2.0_Chr7g0185841 Rosa chinensis HOM05D000102 ORTHO05D000318 2.4e-09 66.2 63 39.7
SalBow3G4112 Salvia bowleyana HOM05D000260 ORTHO05D000318 4.1e-09 65.5 143 28.7
AUR62009021 Chenopodium quinoa HOM05D000260 ORTHO05D000318 7.1e-09 64.7 82 37.8
RcHm_v2.0_Chr7g0185831 Rosa chinensis HOM05D000072 ORTHO05D000026 2.1e-08 63.2 79 31.6
Ciclev10023313m.g Citrus clementina HOM05D000072 ORTHO05D000026 2.7e-08 62.8 107 35.5
TWI60G0982 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 3.5e-08 62.4 147 24.5
Lj2C440G9 Lonicera japonica HOM05D000072 ORTHO05D000026 4.6e-08 62.0 153 28.8
Prupe.5G223900 Prunus persica HOM05D000260 ORTHO05D000318 4.6e-08 62.0 72 36.1
Ca_08084_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000318 6.0e-08 61.6 116 31.9
BolC2t08364H Brassica oleracea HOM05D000072 ORTHO05D000026 1.3e-07 60.5 86 38.4
Gohir.A11G165350 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.3e-07 60.5 152 28.9
Oeu036850.1 Olea europaea HOM05D000260 ORTHO05D000318 1.3e-07 60.5 129 30.2
Prupe.5G223800 Prunus persica HOM05D000072 ORTHO05D000026 1.7e-07 60.1 78 33.3
Hund16172 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.7e-07 60.1 154 26.0
Gohir.D12G053400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.3e-07 59.7 79 35.4
CsaV3_2G033790 Cucumis sativus L. HOM05D000260 ORTHO05D000318 3.0e-07 59.3 146 27.4
Eucgr.L03194 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.9e-07 58.9 78 37.2
CAN.G610.31 Capsicum annuum HOM05D000260 ORTHO05D000318 5.1e-07 58.5 60 40.0
FvH4_5g11760 Fragaria vesca HOM05D000260 ORTHO05D000318 5.1e-07 58.5 57 40.4
Ca_08086_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 6.6e-07 58.2 121 26.4
Gohir.A11G164300 Gossypium hirsutum HOM05D000260 ORTHO05D000318 6.6e-07 58.2 152 28.3
RcHm_v2.0_Chr7g0185931 Rosa chinensis HOM05D000072 ORTHO05D000026 6.6e-07 58.2 57 38.6
RcHm_v2.0_Chr7g0186011 Rosa chinensis HOM05D000260 ORTHO05D000318 6.6e-07 58.2 58 36.2
EL10Ac2g04544 Beta vulgaris HOM05D000260 ORTHO05D000318 8.6e-07 57.8 147 29.3
AUR62009029 Chenopodium quinoa HOM05D000072 ORTHO05D000026 8.6e-07 57.8 124 28.2
Ciclev10024220m.g Citrus clementina HOM05D000260 ORTHO05D000318 8.6e-07 57.8 121 32.2
Gohir.A11G165500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 8.6e-07 57.8 94 34.0
Carub.0002s1315 Capsella rubella HOM05D000072 ORTHO05D000026 1.1e-06 57.4 147 29.3
Thhalv10027672m.g Eutrema salsugineum HOM05D000072 ORTHO05D000026 1.1e-06 57.4 82 36.6
Lj2C440G3 Lonicera japonica HOM05D000072 ORTHO05D000318 1.1e-06 57.4 78 32.1
RcHm_v2.0_Chr7g0185881 Rosa chinensis HOM05D000072 ORTHO05D000026 1.5e-06 57.0 73 28.8
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 1.5e-06 57.0 120 27.5
BcaC03g14773 Brassica carinata HOM05D000026 ORTHO05D016103 1.9e-06 56.6 79 39.2
Dinv33960 Davidia involucrata HOM05D000260 ORTHO05D000318 1.9e-06 56.6 63 38.1
FAN08G3342 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.5e-06 56.2 51 41.2
Gorai.008G056600 Gossypium raimondii HOM05D000260 ORTHO05D000318 2.5e-06 56.2 79 34.2
Hma1.2p1_1109F.1_g258220 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 2.5e-06 56.2 114 28.9
Thecc.03G039000 Theobroma cacao HOM05D000072 ORTHO05D000026 2.5e-06 56.2 121 30.6
Aa31LG9G17160 Aethionema arabicum HOM05D000072 ORTHO05D000318 3.3e-06 55.8 156 28.2
Aa31LG9G17180 Aethionema arabicum HOM05D000260 ORTHO05D000318 3.3e-06 55.8 156 28.2
BraA02t06437Z Brassica rapa HOM05D000260 ORTHO05D000318 3.3e-06 55.8 83 38.6
AUR62009020 Chenopodium quinoa HOM05D000260 ORTHO05D000318 3.3e-06 55.8 90 30.0
Eucgr.B00749 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.3e-06 55.8 134 27.6
Eucgr.B00759 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.3e-06 55.8 104 29.8
MD06G1218300 Malus domestica HOM05D000072 ORTHO05D000026 3.3e-06 55.8 72 36.1
Manes.02G070200 Manihot esculenta HOM05D000072 ORTHO05D000026 3.3e-06 55.8 87 32.2
GSVIVG01030995001 Vitis vinifera HOM05D000072 ORTHO05D000026 3.3e-06 55.8 148 25.0
AT1G66930 Arabidopsis thaliana HOM05D000072 ORTHO05D000026 4.3e-06 55.5 80 37.5
EL10Ac2g04539 Beta vulgaris HOM05D000072 ORTHO05D000026 4.3e-06 55.5 53 41.5
BcaC03g14769 Brassica carinata HOM05D000260 ORTHO05D000318 4.3e-06 55.5 80 38.8
FAN18G1212 Fragaria x ananassa HOM05D000260 ORTHO05D000318 4.3e-06 55.5 61 34.4
FAN18G3675 Fragaria x ananassa HOM05D000260 ORTHO05D000318 4.3e-06 55.5 61 34.4
Lj2A439G34 Lonicera japonica HOM05D000260 ORTHO05D000318 4.3e-06 55.5 79 31.6
Lj9C529G2 Lonicera japonica HOM05D000260 ORTHO05D000318 4.3e-06 55.5 79 31.6
AUR62023281 Chenopodium quinoa HOM05D000260 ORTHO05D000318 5.6e-06 55.1 154 25.3
Eucgr.B00761 Eucalyptus grandis HOM05D000260 ORTHO05D000318 5.6e-06 55.1 120 24.2
Eucgr.B00770 Eucalyptus grandis HOM05D000260 ORTHO05D000318 5.6e-06 55.1 120 24.2
FAN04G3271 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.6e-06 55.1 87 32.2
FAN08G3525 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.6e-06 55.1 53 41.5
Oeu016632.1 Olea europaea HOM05D000072 ORTHO05D000026 5.6e-06 55.1 153 24.8
Sc06g0006900 Simmondsia chinensis HOM05D000260 ORTHO05D000318 5.6e-06 55.1 148 26.4
Atru.chr9.895_Atru.chr9.896 Acer truncatum HOM05D000260 ORTHO05D000318 7.3e-06 54.7 162 26.5
EL10Ac2g04545 Beta vulgaris HOM05D000260 ORTHO05D000318 7.3e-06 54.7 157 24.2
MD17G1248300 Malus domestica HOM05D000260 ORTHO05D000318 7.3e-06 54.7 124 31.5
Dinv34800 Davidia involucrata HOM05D000260 ORTHO05D000318 9.6e-06 54.3 88 31.8
Medtr7g082460 Medicago truncatula HOM05D000072 ORTHO05D000026 9.6e-06 54.3 93 31.2
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 9.6e-06 54.3 96 31.2


User provided reference genes

Program Settings