Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.0e-211 740.0 423 100.0
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 5.1e-182 641.3 429 89.3
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 5.1e-182 641.3 429 89.3
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 4.1e-176 621.7 420 88.8
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-172 608.6 401 90.0
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 9.9e-170 600.5 434 83.9
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 8.4e-169 597.4 424 85.4
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-168 597.0 411 85.9
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.1e-168 597.0 413 87.4
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 3.0e-166 589.0 432 84.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 6.6e-166 587.8 436 83.7
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.6e-165 584.7 392 89.5
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 9.6e-165 583.9 434 83.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 9.0e-163 577.4 428 82.9
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.6e-159 566.6 426 82.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 4.6e-159 565.1 428 82.2
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 8.7e-158 560.8 427 82.0
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.4e-152 543.5 430 79.8
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.5e-138 495.4 423 73.8
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.2e-136 489.2 341 87.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 2.3e-118 429.9 447 63.5
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.0e-118 429.5 393 69.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.8e-116 422.9 461 61.8
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.7e-116 422.5 372 72.6
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.0e-114 416.8 383 69.2
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.0e-113 414.5 393 68.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.2e-113 413.3 461 62.7
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.9e-113 412.9 386 69.2
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.5e-113 411.8 386 68.9
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.5e-112 410.6 386 67.6
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.9e-112 410.2 367 70.6
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 4.2e-112 409.1 389 69.2
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 9.4e-112 407.9 386 68.4
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 2.1e-111 406.8 383 68.4
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.6e-111 406.0 388 67.5
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 8.0e-111 404.8 385 69.1
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.8e-110 403.7 379 68.1
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.2e-109 401.0 399 66.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 7.5e-109 398.3 385 68.1
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 2.8e-108 396.4 378 66.9
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.8e-107 393.7 454 60.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 9.1e-107 391.3 383 67.4
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.2e-106 391.0 381 67.5
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.2e-106 391.0 369 68.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 2.0e-106 390.2 391 66.8
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.7e-106 389.8 369 68.0
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 3.5e-106 389.4 379 66.0
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 5.9e-106 388.7 443 59.4
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 5.9e-106 388.7 383 66.6
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.3e-105 387.5 385 65.5
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.3e-105 387.5 389 65.0
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.7e-105 387.1 426 61.0
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.8e-105 386.0 446 60.3
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.8e-105 386.0 385 65.5
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.8e-105 386.0 371 66.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 5.0e-105 385.6 337 73.6
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.5e-105 385.2 387 65.4
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 6.5e-105 385.2 365 67.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.1e-104 384.4 371 68.7
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.5e-104 384.0 367 65.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.5e-104 384.0 356 68.3
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.5e-104 384.0 371 65.8
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.5e-104 383.3 385 64.7
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 5.5e-104 382.1 336 72.9
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.1e-103 380.2 363 67.2
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 3.6e-103 379.4 378 64.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 6.1e-103 378.6 374 65.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.0e-102 377.9 316 74.4
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.4e-102 377.5 372 66.4
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.8e-102 377.1 386 64.0
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.3e-102 376.7 334 71.6
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.0e-102 375.9 380 62.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 4.0e-102 375.9 410 58.0
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 6.8e-102 375.2 315 73.0
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 8.8e-102 374.8 341 69.2
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.2e-101 374.4 353 66.9
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.5e-101 374.0 329 72.3
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.3e-100 370.9 387 60.7
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 3.1e-99 366.3 375 64.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.7e-98 363.2 405 61.0
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.0e-97 361.3 371 66.0
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.3e-97 360.1 345 67.0
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 3.3e-96 356.3 377 63.1
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.2e-96 355.9 258 74.8
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.2e-95 354.4 345 67.2
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.1e-95 353.6 316 71.5
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.6e-95 352.8 382 60.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.4e-94 350.9 380 59.5
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 3.0e-94 349.7 299 65.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.0e-93 347.1 381 61.7
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 7.5e-93 345.1 373 61.4
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 9.8e-93 344.7 354 64.1
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.3e-92 344.4 331 67.4
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.6e-90 337.4 311 68.8
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.0e-89 334.7 357 62.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.3e-89 333.6 322 66.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.1e-88 331.3 310 70.0
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 4.4e-85 319.3 242 70.7
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.6e-79 299.7 370 59.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.6e-77 293.5 297 65.0
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.9e-75 287.3 345 58.3
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.9e-75 287.3 357 56.9
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.4e-75 287.0 304 63.8
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.1e-64 251.5 181 76.2
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.6e-63 246.5 229 64.6
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 6.4e-60 235.7 162 77.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.6e-55 221.1 345 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.6e-50 203.0 311 46.3
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-49 201.8 278 54.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 5.6e-48 196.1 239 46.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.3e-47 194.9 206 65.5
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.6e-47 193.4 131 80.2
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.2e-47 192.6 245 47.8
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.1e-43 181.8 205 65.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 4.0e-38 163.3 243 40.3
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.2e-34 151.8 244 50.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.6e-34 149.8 110 72.7
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 6.0e-34 149.4 359 37.6
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.5e-29 134.8 77 90.9
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.5e-27 127.5 191 57.6
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 3.6e-18 97.1 60 80.0
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.0e-17 95.5 157 50.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 5.5e-11 73.2 101 49.5


User provided reference genes

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