Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24140 Brassica carinata HOM05D000033 ORTHO05D014383 2.5e-86 322.0 156 100.0
BcaC06g34208 Brassica carinata HOM05D000033 ORTHO05D001688 6.1e-32 141.4 140 56.4
C07p31660 Brassica napus HOM05D000033 ORTHO05D001688 6.1e-32 141.4 140 56.4
BolC7t43705H Brassica oleracea HOM05D000033 ORTHO05D001688 6.1e-32 141.4 140 56.4
A06p44560 Brassica napus HOM05D000033 ORTHO05D001688 7.9e-32 141.0 140 56.4
BraA06t27330Z Brassica rapa HOM05D000033 ORTHO05D001688 7.9e-32 141.0 140 56.4
Sp2g12670 Schrenkiella parvula HOM05D000033 ORTHO05D001688 8.2e-29 131.0 143 51.7
Thhalv10000800m.g Eutrema salsugineum HOM05D000033 ORTHO05D001688 1.8e-28 129.8 143 52.4
AT2G01210 Arabidopsis thaliana HOM05D000033 ORTHO05D001688 6.9e-28 127.9 144 51.4
Carub.0005s0019 Capsella rubella HOM05D000033 ORTHO05D001688 1.5e-27 126.7 143 51.0
AL5G10160 Arabidopsis lyrata HOM05D000033 ORTHO05D001688 2.0e-27 126.3 144 51.4
CARHR143740 Cardamine hirsuta HOM05D000033 ORTHO05D001688 3.4e-27 125.6 143 50.3
BcaC08g47149 Brassica carinata HOM05D022594 ORTHO05D014383 4.5e-27 125.2 64 96.9
BcaB05g23843 Brassica carinata HOM05D000033 ORTHO05D014383 6.5e-26 121.3 67 89.6
BcaB01g02354 Brassica carinata HOM05D000451 ORTHO05D000351 1.4e-25 120.2 64 92.2
BcaB04g17670 Brassica carinata HOM05D000033 ORTHO05D014383 1.4e-25 120.2 64 93.8
BcaC06g31324 Brassica carinata HOM05D000033 ORTHO05D001688 4.7e-24 115.2 122 53.3
Aa31LG2G8680 Aethionema arabicum HOM05D000033 ORTHO05D001688 1.1e-22 110.5 142 46.5
BcaB02g10172 Brassica carinata HOM05D000331 ORTHO05D014383 2.0e-22 109.8 157 47.1
THA.LOC104824155 Tarenaya hassleriana HOM05D000033 ORTHO05D001688 2.6e-22 109.4 141 45.4
SalBow8G4078 Salvia bowleyana HOM05D000033 ORTHO05D001688 1.7e-18 96.7 140 42.1
Oeu048366.1 Olea europaea HOM05D000033 ORTHO05D001688 8.5e-18 94.4 146 40.4
COL.COLO4_32142 Corchorus olitorius HOM05D000033 ORTHO05D001688 2.5e-17 92.8 161 38.5
Duzib251G0771 Durio zibethinus HOM05D000033 ORTHO05D001688 4.2e-17 92.0 163 38.0
ECA233G2852 Erigeron canadensis HOM05D000033 ORTHO05D001688 5.5e-17 91.7 136 40.4
Lsat_1_v5_gn_8_41440 Lactuca sativa HOM05D000033 ORTHO05D001688 7.2e-17 91.3 136 39.7
AUR62014120 Chenopodium quinoa HOM05D000033 ORTHO05D001688 9.4e-17 90.9 136 38.2
Duzib268G0069 Durio zibethinus HOM05D000033 ORTHO05D001688 1.2e-16 90.5 164 37.8
FAN07G0510 Fragaria x ananassa HOM05D000033 ORTHO05D001688 1.6e-16 90.1 161 37.9
HanXRQChr14g0459161 Helianthus annuus HOM05D000033 ORTHO05D001688 1.6e-16 90.1 136 39.7
QL01p010796 Quercus lobata HOM05D000033 ORTHO05D001688 2.7e-16 89.4 147 40.1
Gohir.D02G172000 Gossypium hirsutum HOM05D000033 ORTHO05D001688 3.6e-16 89.0 163 36.8
Gorai.005G193500 Gossypium raimondii HOM05D000033 ORTHO05D001688 3.6e-16 89.0 163 36.8
CANSAT01G0220 Cannabis sativa HOM05D000033 ORTHO05D001688 4.7e-16 88.6 142 39.4
Dinv31595 Davidia involucrata HOM05D000033 ORTHO05D001688 4.7e-16 88.6 147 39.5
FAN22G0490 Fragaria x ananassa HOM05D000033 ORTHO05D001688 6.1e-16 88.2 162 37.7
Gohir.A03G149000 Gossypium hirsutum HOM05D000033 ORTHO05D001688 6.1e-16 88.2 163 36.8
EL10Ac6g14304 Beta vulgaris HOM05D000033 ORTHO05D001688 8.0e-16 87.8 138 37.0
FvH4_4g26710 Fragaria vesca HOM05D000033 ORTHO05D001688 8.0e-16 87.8 161 37.3
FAN12G4095 Fragaria x ananassa HOM05D000033 ORTHO05D001688 8.0e-16 87.8 161 37.3
FAN12G4118 Fragaria x ananassa HOM05D000033 ORTHO05D001688 8.0e-16 87.8 161 37.3
FAN17G1002 Fragaria x ananassa HOM05D000033 ORTHO05D001688 8.0e-16 87.8 144 38.9
QL01p010721 Quercus lobata HOM05D000033 ORTHO05D001688 8.0e-16 87.8 148 40.5
MD13G1035300 Malus domestica HOM05D000033 ORTHO05D001688 1.4e-15 87.0 162 35.8
RcHm_v2.0_Chr4g0434401 Rosa chinensis HOM05D000033 ORTHO05D001688 1.4e-15 87.0 144 39.6
Atru.chr11.239 Acer truncatum HOM05D000033 ORTHO05D001688 1.8e-15 86.7 164 36.0
AUR62002811 Chenopodium quinoa HOM05D000033 ORTHO05D001688 2.3e-15 86.3 138 36.2
Lj3A880T116 Lonicera japonica HOM05D000033 ORTHO05D001688 2.3e-15 86.3 146 39.7
Potri.010G120100 Populus trichocarpa HOM05D000033 ORTHO05D001688 2.3e-15 86.3 147 38.8
Rhsim09G0103800 Rhododendron simsii HOM05D000033 ORTHO05D001688 2.3e-15 86.3 148 39.2
Potri.008G124300 Populus trichocarpa HOM05D000033 ORTHO05D001688 3.0e-15 85.9 164 36.6
CAN.G610.23 Capsicum annuum HOM05D000033 ORTHO05D001688 3.9e-15 85.5 159 37.1
Actinidia14922 Actinidia chinensis HOM05D000033 ORTHO05D001688 5.2e-15 85.1 144 38.2
Thecc.02G222200 Theobroma cacao HOM05D000033 ORTHO05D001688 5.2e-15 85.1 165 35.8
MSTRG.7641 Avicennia marina HOM05D000033 ORTHO05D001688 6.7e-15 84.7 142 38.7
Cfa015836 Carpinus fangiana HOM05D000033 ORTHO05D001688 6.7e-15 84.7 163 35.6
Nitab4.5_0002112g0060 Nicotiana tabacum HOM05D000033 ORTHO05D001688 6.7e-15 84.7 159 37.1
Peaxi162Scf00179g00529 Petunia axillaris HOM05D000033 ORTHO05D001688 6.7e-15 84.7 159 35.2
Haze_00655 Corylus avellana HOM05D000033 ORTHO05D001688 8.8e-15 84.3 163 35.6
Prupe.1G316900 Prunus persica HOM05D000033 ORTHO05D001688 8.8e-15 84.3 164 36.0
Sabra10G0090300 Salix brachista HOM05D000033 ORTHO05D001688 8.8e-15 84.3 148 39.9
CiPaw.05G242700 Carya illinoinensis HOM05D000033 ORTHO05D001688 1.1e-14 84.0 163 36.2
Manes.06G064600 Manihot esculenta HOM05D000033 ORTHO05D001688 1.1e-14 84.0 165 34.5
MSTRG.862 Avicennia marina HOM05D000033 ORTHO05D001688 1.5e-14 83.6 142 38.0
PGSC0003DMG400030572 Solanum tuberosum HOM05D000033 ORTHO05D001688 1.5e-14 83.6 161 36.0
Ciclev10014433m.g Citrus clementina HOM05D000033 ORTHO05D001688 2.0e-14 83.2 162 36.4
CSS0038841 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001688 2.6e-14 82.8 144 37.5
Cc11_g09660 Coffea canephora HOM05D000033 ORTHO05D001688 2.6e-14 82.8 126 42.9
Eucgr.G02237 Eucalyptus grandis HOM05D000033 ORTHO05D001688 2.6e-14 82.8 145 38.6
vmacro10600 Vaccinium macrocarpon HOM05D000033 ORTHO05D001688 2.6e-14 82.8 148 37.8
CSS0018758 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001688 3.3e-14 82.4 144 38.9
Nn3g17954 Nelumbo nucifera HOM05D000033 ORTHO05D001688 3.3e-14 82.4 145 38.6
Nitab4.5_0000694g0140 Nicotiana tabacum HOM05D000033 ORTHO05D001688 3.3e-14 82.4 160 37.5
TWI75G1233 Tripterygium wilfordii HOM05D000033 ORTHO05D001688 3.3e-14 82.4 164 34.1
Aqoxy3G00197 Aquilegia oxysepala HOM05D000033 ORTHO05D001688 4.4e-14 82.0 143 36.4
Solyc05g008860.4 Solanum lycopersicum HOM05D000033 ORTHO05D001688 4.4e-14 82.0 161 35.4
TWI31G0295 Tripterygium wilfordii HOM05D000033 ORTHO05D001688 4.4e-14 82.0 147 38.1
Sabra08G0094000 Salix brachista HOM05D000033 ORTHO05D001688 5.7e-14 81.6 146 39.0
Glyma.19G063800 Glycine max HOM05D000033 ORTHO05D001688 7.4e-14 81.3 145 37.9
CiPaw.06G016500 Carya illinoinensis HOM05D000033 ORTHO05D001688 9.7e-14 80.9 162 35.2
Sc11g0003840 Simmondsia chinensis HOM05D000033 ORTHO05D001688 9.7e-14 80.9 146 36.3
Sopen05g004620 Solanum pennellii HOM05D000033 ORTHO05D001688 1.3e-13 80.5 161 35.4
Actinidia16684 Actinidia chinensis HOM05D000033 ORTHO05D001688 1.7e-13 80.1 137 39.4
MD16G1037100 Malus domestica HOM05D000033 ORTHO05D001688 2.2e-13 79.7 145 36.6
PSO478G0581 Papaver somniferum HOM05D000033 ORTHO05D001688 2.2e-13 79.7 143 39.2
Manes.14G107000 Manihot esculenta HOM05D000033 ORTHO05D001688 2.8e-13 79.3 148 37.2
Nn4g23957 Nelumbo nucifera HOM05D000033 ORTHO05D001688 2.8e-13 79.3 144 38.9
PSO017G2901 Papaver somniferum HOM05D000033 ORTHO05D001688 2.8e-13 79.3 143 39.2
Ah.10g036980 Amaranthus hybridus HOM05D000033 ORTHO05D001688 3.7e-13 79.0 155 32.9
Cpa.g.sc65.67 Carica papaya HOM05D000033 ORTHO05D001688 3.7e-13 79.0 151 37.1
Sc04g0006010 Simmondsia chinensis HOM05D000033 ORTHO05D001688 3.7e-13 79.0 139 36.7
Dinv16137 Davidia involucrata HOM05D000033 ORTHO05D001688 4.8e-13 78.6 163 35.6
TAR535G0008 Trochodendron aralioides HOM05D000033 ORTHO05D001688 4.8e-13 78.6 164 35.4
Ca_06890_v3 Cicer arietinum L. HOM05D000033 ORTHO05D001688 8.2e-13 77.8 143 37.1
arahy.Tifrunner.gnm1.ann1.4Z4MNU Arachis hypogaea HOM05D000033 ORTHO05D001688 1.1e-12 77.4 146 34.9
arahy.Tifrunner.gnm1.ann1.NWKH4J Arachis hypogaea HOM05D000033 ORTHO05D001688 1.1e-12 77.4 146 34.9
Hma1.2p1_0767F.1_g215530 Hydrangea macrophylla HOM05D000033 ORTHO05D001688 1.1e-12 77.4 144 38.2
Lj2g0011103 Lotus japonicus HOM05D000033 ORTHO05D001688 1.4e-12 77.0 143 38.5
DCAR_030180 Daucus carota HOM05D000033 ORTHO05D001688 1.8e-12 76.6 139 38.1
ATR0681G088 Amborella trichopoda HOM05D000033 ORTHO05D001688 2.4e-12 76.3 161 32.9
arahy.Tifrunner.gnm1.ann1.RQKH3A Arachis hypogaea HOM05D000033 ORTHO05D001688 5.3e-12 75.1 146 34.2
GSVIVG01011842001 Vitis vinifera HOM05D000033 ORTHO05D001688 5.3e-12 75.1 144 36.1
Migut.L01025 Erythranthe guttata HOM05D000033 ORTHO05D001688 7.0e-12 74.7 143 35.7
Lj5g0007057 Lotus japonicus HOM05D000033 ORTHO05D001688 7.0e-12 74.7 146 35.6
Lj5g0020877 Lotus japonicus HOM05D000033 ORTHO05D001688 7.0e-12 74.7 146 35.6
HanXRQChr08g0213421 Helianthus annuus HOM05D000033 ORTHO05D001688 1.2e-11 73.9 137 35.8
Lalb_Chr02g0145751 Lupinus albus HOM05D000033 ORTHO05D001688 1.6e-11 73.6 144 36.1
MBI09_g25156_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D001688 1.6e-11 73.6 143 36.4
Medtr1g109580 Medicago truncatula HOM05D000033 ORTHO05D001688 1.6e-11 73.6 142 35.9
SGA_v2.0_scaffold38G15003 Striga asiatica HOM05D000033 ORTHO05D001688 2.0e-11 73.2 142 33.8
MELO3C005339.2 Cucumis melo HOM05D000033 ORTHO05D001688 5.9e-11 71.6 142 34.5
ClCG01G005910 Citrullus lanatus HOM05D000033 ORTHO05D001688 7.7e-11 71.2 142 36.6
DCAR_007265 Daucus carota HOM05D000033 ORTHO05D001688 7.7e-11 71.2 142 35.9
Sed0019787 Sechium edule HOM05D000033 ORTHO05D001688 7.7e-11 71.2 143 39.2
TAR374G0303 Trochodendron aralioides HOM05D000033 ORTHO05D001688 7.7e-11 71.2 141 37.6
CsaV3_5G028780 Cucumis sativus L. HOM05D000033 ORTHO05D001688 1.0e-10 70.9 142 34.5
Gorai.009G348000 Gossypium raimondii HOM05D000033 ORTHO05D001688 1.0e-10 70.9 140 35.7
Psat6g224320 Pisum sativum HOM05D000033 ORTHO05D001688 1.0e-10 70.9 140 36.4
arahy.Tifrunner.gnm1.ann1.N5B1E6 Arachis hypogaea HOM05D000033 ORTHO05D001688 1.3e-10 70.5 138 33.3
HPP92_009683 Vanilla planifolia HOM05D000033 ORTHO05D001688 1.3e-10 70.5 161 31.1
VMungo0720G1748 Vigna mungo HOM05D000033 ORTHO05D001688 1.3e-10 70.5 143 35.7
Glyma.20G120700 Glycine max HOM05D000033 ORTHO05D001688 2.2e-10 69.7 145 34.5
CsaV3_5G034600 Cucumis sativus L. HOM05D000033 ORTHO05D001688 2.9e-10 69.3 148 32.4
Glyma.10G270600 Glycine max HOM05D000033 ORTHO05D001688 2.9e-10 69.3 146 34.9
Sed0026461 Sechium edule HOM05D000033 ORTHO05D001688 2.9e-10 69.3 149 31.5
TAR622G1116 Trochodendron aralioides HOM05D000033 ORTHO05D001688 2.9e-10 69.3 140 38.6
ClCG00G003420 Citrullus lanatus HOM05D000033 ORTHO05D001688 3.8e-10 68.9 148 32.4
ClCG05G022470 Citrullus lanatus HOM05D000033 ORTHO05D001688 3.8e-10 68.9 148 32.4
MELO3C012275.2 Cucumis melo HOM05D000033 ORTHO05D001688 3.8e-10 68.9 148 32.4
Gohir.A05G322100 Gossypium hirsutum HOM05D000033 ORTHO05D001688 6.5e-10 68.2 140 34.3
Phvul.007G032100 Phaseolus vulgaris HOM05D000033 ORTHO05D001688 6.5e-10 68.2 147 35.4
Lalb_Chr17g0338811 Lupinus albus HOM05D000033 ORTHO05D001688 8.5e-10 67.8 144 34.7
SGA_v2.0_scaffold14G06910 Striga asiatica HOM05D000033 ORTHO05D001688 8.5e-10 67.8 142 32.4
MBI16_g44828_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D001688 1.9e-09 66.6 146 32.9
arahy.Tifrunner.gnm1.ann1.267FD4 Arachis hypogaea HOM05D000033 ORTHO05D001688 3.6e-08 62.4 147 33.3
SalBow8G3770 Salvia bowleyana HOM05D000033 ORTHO05D001688 8.0e-08 61.2 141 31.2
MSTRG.13556 Avicennia marina HOM05D000033 ORTHO05D001688 1.4e-07 60.5 145 31.7
BcaB07g32711 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-07 60.5 30 83.3
Os01g0514700 Oryza sativa ssp. japonica HOM05D000033 ORTHO05D001688 1.8e-07 60.1 137 32.8
Sed0016590 Sechium edule HOM05D000033 ORTHO05D001688 2.3e-07 59.7 149 26.8
Lalb_Chr10g0096371 Lupinus albus HOM05D000033 ORTHO05D001688 3.0e-07 59.3 145 31.7
THA.LOC104809815 Tarenaya hassleriana HOM05D000033 ORTHO05D001688 4.0e-07 58.9 139 33.1
THA.LOC104815460 Tarenaya hassleriana HOM05D000033 ORTHO05D001688 4.0e-07 58.9 139 33.1
CDE04G3398 Ceratophyllum demersum HOM05D000033 ORTHO05D001688 6.7e-07 58.2 147 30.6
Gohir.D11G172200 Gossypium hirsutum HOM05D000033 ORTHO05D001688 3.3e-06 55.8 128 32.0
Gohir.A11G166200 Gossypium hirsutum HOM05D000033 ORTHO05D001688 4.4e-06 55.5 128 31.2
Gorai.007G184800 Gossypium raimondii HOM05D000033 ORTHO05D001688 4.4e-06 55.5 128 32.0
Zm00001eb132610 Zea mays HOM05D000033 ORTHO05D001688 5.7e-06 55.1 143 30.1
Atru.chr1.1614 Acer truncatum HOM05D000033 ORTHO05D001688 7.5e-06 54.7 136 31.6
Oeu057748.1 Olea europaea HOM05D000033 ORTHO05D001688 7.5e-06 54.7 49 57.1


User provided reference genes

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