Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 8.0e-54 213.4 100 100.0
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 2.0e-52 208.8 100 98.0
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 1.1e-23 113.2 86 68.6
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 6.2e-22 107.5 86 65.1
BcaC05g27724 Brassica carinata HOM05D003212 ORTHO05D017537 4.9e-19 97.8 72 70.8
C05p37050 Brassica napus HOM05D003212 ORTHO05D017537 4.9e-19 97.8 72 70.8
C09p44450 Brassica napus HOM05D003212 ORTHO05D017537 4.9e-19 97.8 72 70.8
BcaC03g17911 Brassica carinata HOM05D003212 ORTHO05D017537 1.8e-16 89.4 63 71.4
BraA10t44669Z Brassica rapa HOM05D003212 ORTHO05D017537 1.8e-16 89.4 72 65.3
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 3.3e-15 85.1 57 75.4
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 3.3e-15 85.1 57 75.4
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 3.3e-15 85.1 57 75.4
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 7.4e-15 84.0 57 75.4
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 7.4e-15 84.0 57 75.4
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 7.4e-15 84.0 57 75.4
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 7.4e-15 84.0 57 75.4
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 7.4e-15 84.0 57 75.4
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 9.6e-15 83.6 57 73.7
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 9.6e-15 83.6 57 75.4
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 9.6e-15 83.6 57 73.7
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 9.6e-15 83.6 57 75.4
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 1.3e-14 83.2 57 73.7
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 1.3e-14 83.2 57 73.7
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 1.6e-14 82.8 57 73.7
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 1.6e-14 82.8 57 73.7
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.1e-13 80.1 57 71.9
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 4.0e-13 78.2 57 68.4
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 5.3e-13 77.8 57 68.4
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 9.0e-13 77.0 56 67.9
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 9.0e-13 77.0 56 67.9
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 9.0e-13 77.0 56 67.9
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.6e-12 75.5 56 66.1
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 2.6e-12 75.5 57 66.7
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 3.4e-12 75.1 57 64.9
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 3.4e-12 75.1 56 67.9
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 3.4e-12 75.1 57 66.7
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 3.4e-12 75.1 56 66.1
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 4.5e-12 74.7 56 66.1
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 5.8e-12 74.3 57 66.7
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.0e-11 73.6 57 64.9
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.0e-11 73.6 56 66.1
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 1.0e-11 73.6 57 64.9
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 1.0e-11 73.6 57 66.7
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 1.7e-11 72.8 50 72.0
BolC5t32459H Brassica oleracea HOM05D003212 ORTHO05D017537 1.7e-11 72.8 49 73.5
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 1.7e-11 72.8 57 64.9
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 1.7e-11 72.8 57 64.9
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 1.7e-11 72.8 57 64.9
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 1.7e-11 72.8 57 64.9
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 2.2e-11 72.4 69 58.0
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 2.9e-11 72.0 57 64.9
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 2.9e-11 72.0 57 64.9
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 3.8e-11 71.6 67 56.7
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 4.9e-11 71.2 55 63.6
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 4.9e-11 71.2 56 62.5
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 4.9e-11 71.2 57 64.9
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 4.9e-11 71.2 55 63.6
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 4.9e-11 71.2 57 64.9
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 6.5e-11 70.9 57 63.2
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 6.5e-11 70.9 56 62.5
CAN.G919.25 Capsicum annuum HOM05D003212 ORTHO05D003959 8.4e-11 70.5 57 63.2
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 8.4e-11 70.5 57 61.4
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 8.4e-11 70.5 57 61.4
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 1.1e-10 70.1 56 62.5
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 61.4
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 63.2
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 1.1e-10 70.1 56 62.5
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 1.1e-10 70.1 57 61.4
BolC8t52206H Brassica oleracea HOM05D003212 ORTHO05D017537 1.9e-10 69.3 67 59.7
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 1.9e-10 69.3 57 61.4
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 1.9e-10 69.3 57 61.4
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 1.9e-10 69.3 57 61.4
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.9e-10 69.3 57 61.4
Eucgr.G03242 Eucalyptus grandis HOM05D003212 ORTHO05D003959 1.9e-10 69.3 56 64.3
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 2.5e-10 68.9 57 59.6
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.5e-10 68.9 57 61.4
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 2.5e-10 68.9 57 61.4
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 3.2e-10 68.6 57 59.6
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 4.2e-10 68.2 57 61.4
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 4.2e-10 68.2 57 57.9
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 4.2e-10 68.2 57 61.4
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 4.2e-10 68.2 56 62.5
QL04p014894 Quercus lobata HOM05D003212 ORTHO05D003959 4.2e-10 68.2 56 62.5
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 4.2e-10 68.2 56 60.7
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 4.2e-10 68.2 56 60.7
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 5.5e-10 67.8 57 61.4
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 5.5e-10 67.8 85 43.5
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 5.5e-10 67.8 57 61.4
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 5.5e-10 67.8 57 61.4
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 5.5e-10 67.8 56 62.5
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 5.5e-10 67.8 57 61.4
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 5.5e-10 67.8 57 61.4
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 7.1e-10 67.4 57 61.4
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 7.1e-10 67.4 57 61.4
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 7.1e-10 67.4 55 61.8
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 7.1e-10 67.4 57 59.6
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 9.3e-10 67.0 56 60.7
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 9.3e-10 67.0 56 62.5
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 9.3e-10 67.0 56 60.7
SalBow5G1921 Salvia bowleyana HOM05D003212 ORTHO05D003959 9.3e-10 67.0 57 59.6
SalBow5G3827 Salvia bowleyana HOM05D003212 ORTHO05D003959 9.3e-10 67.0 57 59.6
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 1.2e-09 66.6 57 59.6
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 1.2e-09 66.6 35 82.9
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 1.2e-09 66.6 35 82.9
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.2e-09 66.6 56 60.7
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.2e-09 66.6 57 59.6
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.2e-09 66.6 57 59.6
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 1.2e-09 66.6 56 60.7
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 1.2e-09 66.6 57 59.6
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 1.6e-09 66.2 56 60.7
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 1.6e-09 66.2 56 60.7
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 1.6e-09 66.2 57 59.6
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.6e-09 66.2 57 57.9
Lalb_Chr04g0264051 Lupinus albus HOM05D003212 ORTHO05D003959 1.6e-09 66.2 56 60.7
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 1.6e-09 66.2 56 60.7
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 1.6e-09 66.2 56 60.7
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 2.1e-09 65.9 41 78.0
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 2.1e-09 65.9 56 60.7
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 2.1e-09 65.9 57 59.6
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 2.7e-09 65.5 35 80.0
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 2.7e-09 65.5 56 58.9
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 2.7e-09 65.5 56 60.7
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.7e-09 65.5 56 60.7
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.7e-09 65.5 56 60.7
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 2.7e-09 65.5 56 60.7
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 2.7e-09 65.5 55 61.8
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 3.5e-09 65.1 56 60.7
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 57.1
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 58.9
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 58.9
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 4.6e-09 64.7 35 80.0
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 4.6e-09 64.7 44 72.7
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 4.6e-09 64.7 44 72.7
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 58.9
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 58.9
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 58.9
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 4.6e-09 64.7 58 55.2
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 4.6e-09 64.7 57 57.9
GSVIVG01000654001 Vitis vinifera HOM05D003212 ORTHO05D003959 4.6e-09 64.7 56 57.1
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 6.0e-09 64.3 35 80.0
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 6.0e-09 64.3 56 58.9
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 6.0e-09 64.3 56 58.9
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 6.0e-09 64.3 56 58.9
VMungo1215G0810 Vigna mungo HOM05D003212 ORTHO05D003959 6.0e-09 64.3 56 58.9
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 7.9e-09 63.9 56 57.1
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 7.9e-09 63.9 56 58.9
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 7.9e-09 63.9 55 58.2
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 7.9e-09 63.9 56 58.9
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 7.9e-09 63.9 56 58.9
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 7.9e-09 63.9 56 58.9
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 7.9e-09 63.9 57 56.1
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 1.0e-08 63.5 59 55.9
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 1.0e-08 63.5 55 58.2
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 1.3e-08 63.2 56 58.9
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 1.3e-08 63.2 56 58.9
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 1.3e-08 63.2 55 58.2
Cpa.g.sc223.10 Carica papaya HOM05D003212 ORTHO05D003959 1.8e-08 62.8 57 56.1
VMungo1309G2010 Vigna mungo HOM05D003212 ORTHO05D003959 1.8e-08 62.8 56 57.1
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 2.3e-08 62.4 56 57.1
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.9e-08 61.6 55 56.4
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 3.9e-08 61.6 56 57.1
SEGI_29745 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 1.1e-07 60.1 55 50.9
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 3.3e-07 58.5 45 64.4
Ca_02713_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.3e-07 58.5 55 52.7
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 3.3e-07 58.5 56 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 9.6e-07 57.0 55 49.1
HPP92_003231 Vanilla planifolia HOM05D003212 ORTHO05D003959 9.6e-07 57.0 45 66.7
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 1.3e-06 56.6 55 54.5
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 1.6e-06 56.2 55 50.9


User provided reference genes

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