Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 3.6e-155 551.6 289 100.0
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 2.5e-148 528.9 289 96.2
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 3.6e-147 525.0 289 95.2
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 3.6e-147 525.0 289 95.2
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 6.8e-138 494.2 269 95.5
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 5.8e-137 491.1 269 95.2
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 9.5e-132 473.8 286 87.4
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 6.2e-131 471.1 287 84.3
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 3.4e-129 465.3 290 83.8
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 5.8e-129 464.5 287 84.3
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 6.4e-128 461.1 288 83.3
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 3.0e-125 452.2 291 79.7
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 2.4e-119 432.6 248 86.7
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 2.1e-110 402.9 292 72.6
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 3.3e-100 369.0 273 70.7
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 7.6e-97 357.8 283 68.6
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.3e-96 357.1 257 70.4
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 2.2e-96 356.3 255 70.6
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.4e-95 353.6 254 70.9
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.2e-95 352.4 254 69.7
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 7.1e-95 351.3 254 69.7
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 7.1e-95 351.3 254 68.9
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.2e-94 350.5 255 69.0
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.0e-93 347.4 275 65.5
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 1.3e-93 347.1 253 69.2
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 2.3e-93 346.3 289 64.4
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 3.9e-93 345.5 255 67.1
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 5.1e-93 345.1 265 67.2
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 5.1e-93 345.1 254 68.1
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 1.5e-92 343.6 301 62.8
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 1.9e-92 343.2 255 68.2
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 5.7e-92 341.7 280 63.9
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 9.7e-92 340.9 305 62.3
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.1e-90 337.4 254 66.9
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.8e-90 336.7 256 66.4
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 2.4e-90 336.3 256 66.4
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 3.1e-90 335.9 255 67.1
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 5.3e-90 335.1 246 66.7
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 5.3e-90 335.1 255 66.7
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 2.0e-89 333.2 299 59.9
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 2.6e-89 332.8 250 64.8
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 5.9e-89 331.6 256 65.2
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 7.7e-89 331.3 283 60.8
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 7.7e-89 331.3 243 65.8
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.0e-88 330.9 232 71.6
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 2.2e-88 329.7 256 65.6
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 2.9e-88 329.3 250 66.0
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 2.9e-88 329.3 302 59.3
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 3.8e-88 328.9 235 67.7
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 5.0e-88 328.6 299 60.5
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 5.0e-88 328.6 310 58.4
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 5.0e-88 328.6 255 65.1
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 8.5e-88 327.8 256 66.0
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 2.5e-87 326.2 295 59.7
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 2.5e-87 326.2 250 64.4
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 5.5e-87 325.1 308 59.4
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 9.4e-87 324.3 256 63.3
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 9.4e-87 324.3 299 57.2
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 1.2e-86 323.9 290 61.7
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 1.6e-86 323.6 301 56.5
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 1.6e-86 323.6 250 64.4
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 3.6e-86 322.4 254 64.6
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 3.6e-86 322.4 255 63.5
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 6.1e-86 321.6 256 63.3
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 6.1e-86 321.6 258 64.3
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 7.9e-86 321.2 280 61.8
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 7.9e-86 321.2 264 62.9
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 3.9e-85 318.9 308 57.8
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 3.9e-85 318.9 247 64.8
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 6.7e-85 318.2 237 67.1
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 6.7e-85 318.2 249 64.3
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 8.8e-85 317.8 254 63.8
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 1.1e-84 317.4 227 69.2
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 1.1e-84 317.4 249 64.3
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 1.5e-84 317.0 248 62.9
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.5e-84 316.2 237 66.7
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 4.3e-84 315.5 264 59.8
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 4.3e-84 315.5 257 63.8
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 2.8e-83 312.8 295 56.9
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 2.8e-83 312.8 249 63.5
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 1.1e-82 310.8 246 63.0
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 3.4e-81 305.8 265 58.9
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 1.9e-79 300.1 224 67.9
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.9e-79 300.1 222 68.5
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 1.9e-79 300.1 305 55.7
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 2.5e-79 299.7 222 67.6
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 4.7e-78 295.4 262 61.8
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 8.8e-77 291.2 292 56.8
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 1.1e-76 290.8 206 68.9
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 1.5e-76 290.4 277 55.6
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 5.3e-74 282.0 222 64.4
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.2e-73 280.8 303 54.1
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 2.2e-72 276.6 261 60.2
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.4e-71 273.9 288 55.2
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 7.2e-71 271.6 206 66.0
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 1.6e-70 270.4 250 58.4
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 1.6e-70 270.4 271 53.1
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.7e-70 269.6 206 65.5
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 8.0e-70 268.1 206 65.5
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 2.2e-67 260.0 247 53.8
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 9.1e-66 254.6 179 71.5
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 3.8e-64 249.2 237 52.7
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 2.5e-63 246.5 248 49.6
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 9.7e-60 234.6 229 55.5
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.8e-58 230.3 235 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 8.0e-54 214.9 243 50.2
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 9.8e-52 208.0 216 50.0
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.3e-48 197.6 178 56.7
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 3.8e-48 196.1 148 68.2
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 1.8e-45 187.2 222 46.4
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 2.3e-24 117.1 223 34.5
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 8.3e-19 98.6 85 58.8
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 2.4e-18 97.1 121 47.1
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 6.6e-16 89.0 74 58.1
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 6.6e-16 89.0 74 58.1
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 7.3e-15 85.5 285 28.1
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 7.6e-12 75.5 228 30.3


User provided reference genes

Program Settings