Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24090 Brassica carinata HOM05D006054 ORTHO05D007951 7.0e-90 334.0 172 100.0
BraA09t41376Z Brassica rapa HOM05D006054 ORTHO05D007951 1.8e-29 133.3 107 68.2
A09p60070 Brassica napus HOM05D006054 ORTHO05D007951 2.4e-29 132.9 107 67.3
C08p43510 Brassica napus HOM05D006054 ORTHO05D007951 3.1e-29 132.5 107 67.3
BolC8t51897H Brassica oleracea HOM05D006054 ORTHO05D007951 5.9e-28 128.3 107 65.4
BcaC07g41342 Brassica carinata HOM05D006054 ORTHO05D007951 1.1e-26 124.0 106 66.0
Carub.0001s1781 Capsella rubella HOM05D006054 ORTHO05D007951 2.5e-26 122.9 106 67.0
Thhalv10008547m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 2.5e-26 122.9 113 61.9
Aa31LG7G2900 Aethionema arabicum HOM05D006054 ORTHO05D007951 9.3e-26 120.9 111 63.1
AL1G30540 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 1.2e-25 120.6 106 65.1
AT1G18170 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 4.6e-25 118.6 114 60.5
Aqoxy3G04019 Aquilegia oxysepala HOM05D006054 ORTHO05D007951 1.1e-23 114.0 110 54.5
PGR044G0876 Punica granatum HOM05D006054 ORTHO05D007951 1.1e-23 114.0 110 57.3
Prupe.5G231900 Prunus persica HOM05D006054 ORTHO05D007951 2.5e-23 112.8 111 55.0
Manes.14G170200 Manihot esculenta HOM05D006054 ORTHO05D007951 3.3e-23 112.5 103 60.2
Atru.chr9.1750 Acer truncatum HOM05D006054 ORTHO05D007951 4.3e-23 112.1 111 55.9
Migut.I00447 Erythranthe guttata HOM05D006054 ORTHO05D007951 9.7e-23 110.9 110 54.5
FAN04G0820 Fragaria x ananassa HOM05D006054 ORTHO05D007951 9.7e-23 110.9 111 55.0
GSVIVG01008414001 Vitis vinifera HOM05D006054 ORTHO05D007951 9.7e-23 110.9 110 53.6
FAN08G1083 Fragaria x ananassa HOM05D006054 ORTHO05D007951 1.3e-22 110.5 111 55.0
Lj5A155T99 Lonicera japonica HOM05D006054 ORTHO05D007951 2.2e-22 109.8 111 53.2
Lj5A156T88 Lonicera japonica HOM05D006054 ORTHO05D007951 2.2e-22 109.8 111 53.2
TAR371G0894 Trochodendron aralioides HOM05D006054 ORTHO05D007951 2.2e-22 109.8 111 55.0
Cpa.g.sc3.410 Carica papaya HOM05D006054 ORTHO05D007951 2.8e-22 109.4 110 53.6
THA.LOC104812166 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 3.7e-22 109.0 111 53.2
vmacro16417 Vaccinium macrocarpon HOM05D006054 ORTHO05D007951 3.7e-22 109.0 110 54.5
Actinidia35123 Actinidia chinensis HOM05D006054 ORTHO05D007951 4.8e-22 108.6 110 52.7
Oeu026288.1 Olea europaea HOM05D006054 ORTHO05D007951 4.8e-22 108.6 111 54.1
RcHm_v2.0_Chr7g0178601 Rosa chinensis HOM05D006054 ORTHO05D007951 4.8e-22 108.6 111 54.1
Nn4g24192 Nelumbo nucifera HOM05D006054 ORTHO05D007951 6.3e-22 108.2 110 53.6
QL10p028192 Quercus lobata HOM05D006054 ORTHO05D007951 6.3e-22 108.2 110 52.7
QL10p028307 Quercus lobata HOM05D006054 ORTHO05D007951 6.3e-22 108.2 110 52.7
CsaV3_1G007080 Cucumis sativus L. HOM05D006054 ORTHO05D007951 8.2e-22 107.8 113 54.0
Psat7g002000 Pisum sativum HOM05D006054 ORTHO05D007951 8.2e-22 107.8 110 52.7
PGSC0003DMG400005734 Solanum tuberosum HOM05D006054 ORTHO05D007951 8.2e-22 107.8 107 54.2
Ca_17203_v3 Cicer arietinum L. HOM05D006054 ORTHO05D007951 1.1e-21 107.5 110 51.8
Thecc.03G053300 Theobroma cacao HOM05D006054 ORTHO05D007951 1.1e-21 107.5 110 50.9
ClCG04G010700 Citrullus lanatus HOM05D006054 ORTHO05D007951 1.4e-21 107.1 110 54.5
Ciclev10009243m.g Citrus clementina HOM05D006054 ORTHO05D007951 1.4e-21 107.1 110 53.6
TPR.G1413 Trifolium pratense HOM05D006054 ORTHO05D007951 1.4e-21 107.1 110 50.9
FAN18G0499 Fragaria x ananassa HOM05D006054 ORTHO05D007951 1.8e-21 106.7 111 53.2
Gorai.004G202900 Gossypium raimondii HOM05D006054 ORTHO05D007951 1.8e-21 106.7 110 51.8
Lalb_Chr16g0387101 Lupinus albus HOM05D006054 ORTHO05D007951 1.8e-21 106.7 110 52.7
Nitab4.5_0008639g0010 Nicotiana tabacum HOM05D006054 ORTHO05D007951 1.8e-21 106.7 110 53.6
COL.COLO4_16137 Corchorus olitorius HOM05D006054 ORTHO05D007951 2.4e-21 106.3 113 51.3
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.4e-21 106.3 107 53.3
CiPaw.15G140700 Carya illinoinensis HOM05D006054 ORTHO05D007951 3.1e-21 105.9 110 51.8
Gohir.D08G192800 Gossypium hirsutum HOM05D006054 ORTHO05D007951 3.1e-21 105.9 110 51.8
Duzib084G0786 Durio zibethinus HOM05D006054 ORTHO05D007951 4.1e-21 105.5 110 50.9
CAN.G1129.15 Capsicum annuum HOM05D006054 ORTHO05D007951 6.9e-21 104.8 107 52.3
Dinv18255 Davidia involucrata HOM05D006054 ORTHO05D007951 6.9e-21 104.8 110 50.0
Medtr8g107010 Medicago truncatula HOM05D006054 ORTHO05D007951 1.2e-20 104.0 110 50.9
THA.LOC104813923 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 1.2e-20 104.0 111 53.2
TWI60G0269 Tripterygium wilfordii HOM05D006054 ORTHO05D007951 1.2e-20 104.0 111 54.1
PSO478G4576 Papaver somniferum HOM05D006054 ORTHO05D007951 1.5e-20 103.6 110 50.0
Sopen03g038040 Solanum pennellii HOM05D006054 ORTHO05D007951 1.5e-20 103.6 107 52.3
DCAR_014010 Daucus carota HOM05D006054 ORTHO05D007951 2.0e-20 103.2 110 50.0
Lj4g0021104 Lotus japonicus HOM05D006054 ORTHO05D007951 2.0e-20 103.2 110 51.8
Cfa019678 Carpinus fangiana HOM05D006054 ORTHO05D007951 2.6e-20 102.8 110 50.9
Gohir.A08G174100 Gossypium hirsutum HOM05D006054 ORTHO05D007951 2.6e-20 102.8 110 50.0
Solyc03g119150.4 Solanum lycopersicum HOM05D006054 ORTHO05D007951 2.6e-20 102.8 113 51.3
PSO017G1288 Papaver somniferum HOM05D006054 ORTHO05D007951 3.4e-20 102.4 110 49.1
VMungo0251G3760 Vigna mungo HOM05D006054 ORTHO05D007951 3.4e-20 102.4 110 49.1
Eucgr.K02266 Eucalyptus grandis HOM05D006054 ORTHO05D007951 4.5e-20 102.1 110 49.1
Glyma.08G052800 Glycine max HOM05D006054 ORTHO05D007951 5.9e-20 101.7 110 50.0
Lsat_1_v5_gn_8_144020 Lactuca sativa HOM05D006054 ORTHO05D007951 5.9e-20 101.7 110 54.5
MD06G1230600 Malus domestica HOM05D006054 ORTHO05D007951 5.9e-20 101.7 112 51.8
Phvul.002G328804 Phaseolus vulgaris HOM05D006054 ORTHO05D007951 5.9e-20 101.7 110 49.1
Hund02327 Selenicereus undatus HOM05D006054 ORTHO05D007951 5.9e-20 101.7 90 55.6
MSTRG.4570 Avicennia marina HOM05D006054 ORTHO05D007951 7.7e-20 101.3 111 52.3
ECA233G1701 Erigeron canadensis HOM05D006054 ORTHO05D007951 7.7e-20 101.3 110 55.5
Potri.012G048300 Populus trichocarpa HOM05D006054 ORTHO05D007951 7.7e-20 101.3 110 50.0
HanXRQChr08g0227401 Helianthus annuus HOM05D006054 ORTHO05D007951 1.0e-19 100.9 110 52.7
MBI12_g30399_MAGBIO Magnolia biondii HOM05D006054 ORTHO05D007951 1.3e-19 100.5 110 51.8
Rhsim12G0139100 Rhododendron simsii HOM05D006054 ORTHO05D007951 1.3e-19 100.5 111 51.4
Sed0027930 Sechium edule HOM05D006054 ORTHO05D007951 1.3e-19 100.5 110 50.9
CSS0009173 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 1.7e-19 100.1 111 48.6
CSS0029176 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 1.7e-19 100.1 111 48.6
Cc04_g06390 Coffea canephora HOM05D006054 ORTHO05D007951 3.8e-19 99.0 110 48.2
MD14G1235200 Malus domestica HOM05D006054 ORTHO05D007951 3.8e-19 99.0 110 49.1
arahy.Tifrunner.gnm1.ann1.LZ1976 Arachis hypogaea HOM05D006054 ORTHO05D007951 5.0e-19 98.6 108 50.9
Hma1.2p1_0669F.1_g200190 Hydrangea macrophylla HOM05D006054 ORTHO05D007951 5.0e-19 98.6 110 50.0
Sabra12G0033800 Salix brachista HOM05D006054 ORTHO05D007951 5.0e-19 98.6 110 50.0
arahy.Tifrunner.gnm1.ann1.FT2DSH Arachis hypogaea HOM05D006054 ORTHO05D007951 2.5e-18 96.3 108 49.1
Glyma.05G245200 Glycine max HOM05D006054 ORTHO05D007951 5.5e-18 95.1 110 50.0
Aa31LG4G3960 Aethionema arabicum HOM05D006054 ORTHO05D007951 2.7e-17 92.8 111 48.6
Os03g0708500 Oryza sativa ssp. japonica HOM05D006054 ORTHO05D007951 1.0e-16 90.9 110 47.3
A07p29740 Brassica napus HOM05D006054 ORTHO05D007951 1.8e-16 90.1 103 50.5
BraA07t30613Z Brassica rapa HOM05D006054 ORTHO05D007951 1.8e-16 90.1 103 50.5
Zm00001eb216540 Zea mays HOM05D006054 ORTHO05D007951 1.8e-16 90.1 113 44.2
AUR62041524 Chenopodium quinoa HOM05D006054 ORTHO05D007951 2.3e-16 89.7 139 38.8
AUR62043302 Chenopodium quinoa HOM05D006054 ORTHO05D007951 2.3e-16 89.7 139 38.8
Duzib068G1027 Durio zibethinus HOM05D006054 ORTHO05D007951 3.9e-16 89.0 101 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1432 Anthoceros agrestis HOM05D006054 ORTHO05D007951 5.1e-16 88.6 110 45.5
BcaB03g15721 Brassica carinata HOM05D006054 ORTHO05D007951 5.1e-16 88.6 114 44.7
CDE06G1309 Ceratophyllum demersum HOM05D006054 ORTHO05D007951 1.1e-15 87.4 57 71.9
Thhalv10019056m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 1.1e-15 87.4 114 43.9
BcaC08g45629 Brassica carinata HOM05D006054 ORTHO05D007951 1.5e-15 87.0 103 48.5
CDE07G1103 Ceratophyllum demersum HOM05D006054 ORTHO05D007597 1.5e-15 87.0 59 67.8
AT1G73655 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 2.0e-15 86.7 107 46.7
ATR1102G034 Amborella trichopoda HOM05D006054 ORTHO05D007951 4.4e-15 85.5 103 45.6
Carub.0002s2040 Capsella rubella HOM05D006054 ORTHO05D007951 5.7e-15 85.1 109 45.0
AL2G33440 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 1.3e-14 84.0 108 46.3
SMO200G0018 Selaginella moellendorffii HOM05D006054 ORTHO05D007951 2.8e-14 82.8 109 44.0
Sp5g28830 Schrenkiella parvula HOM05D006054 ORTHO05D007951 4.8e-14 82.0 112 43.8
Mapoly0139s0002 Marchantia polymorpha HOM05D006054 ORTHO05D007951 6.3e-14 81.6 110 44.5
C06p33920 Brassica napus HOM05D006054 ORTHO05D007951 1.1e-13 80.9 103 46.6
BolC6t38505H Brassica oleracea HOM05D006054 ORTHO05D007951 1.1e-13 80.9 103 46.6
Haze_18811 Corylus avellana HOM05D006054 ORTHO05D007951 2.4e-13 79.7 94 46.8
Pp3c16_12630 Physcomitrium patens HOM05D006054 ORTHO05D007951 5.3e-13 78.6 109 41.3
CARHR066720 Cardamine hirsuta HOM05D006054 ORTHO05D007951 2.6e-12 76.3 112 42.0
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.4e-12 75.9 107 43.9
MELO3C002126.2 Cucumis melo HOM05D006054 ORTHO05D007951 6.5e-11 71.6 111 44.1
CARHR018740 Cardamine hirsuta HOM05D006054 ORTHO05D007951 1.1e-10 70.9 75 54.7
AUR62042074 Chenopodium quinoa HOM05D006054 ORTHO05D007951 3.6e-09 65.9 133 36.8
Cre02.g095097 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D007951 8.8e-08 61.2 111 36.9
Actinidia18902 Actinidia chinensis HOM05D006054 ORTHO05D007951 5.7e-07 58.5 79 45.6
Ah.11g043570 Amaranthus hybridus HOM05D006054 ORTHO05D007951 7.4e-07 58.2 111 36.9
MCO04G385 Micromonas commoda HOM05D006054 ORTHO05D007951 9.7e-07 57.8 68 41.2


User provided reference genes

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