Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 8.0e-130 467.2 258 100.0
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.0e-124 448.0 259 94.2
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 3.6e-122 441.8 258 89.9
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 3.6e-122 441.8 259 89.6
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 3.6e-122 441.8 258 89.9
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 3.6e-122 441.8 259 89.6
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 7.7e-117 424.1 252 91.7
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 1.4e-113 413.3 258 85.7
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.8e-113 412.9 264 87.5
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 3.7e-111 405.2 259 83.0
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 5.0e-108 394.8 253 84.6
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 6.4e-103 377.9 261 80.1
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.0e-100 370.5 254 82.7
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.1e-97 360.5 266 70.7
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 5.2e-81 305.1 249 63.9
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 6.8e-81 304.7 230 64.8
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.6e-80 302.8 230 65.2
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.4e-80 302.0 241 63.1
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 1.3e-79 300.4 223 66.8
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 1.3e-79 300.4 233 63.5
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.3e-79 300.4 230 65.2
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 2.2e-79 299.7 245 62.0
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 2.9e-79 299.3 251 60.6
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.9e-79 298.5 223 66.4
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.4e-79 297.7 230 64.3
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.1e-78 297.4 250 60.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 5.4e-78 295.0 228 64.9
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.2e-77 293.9 254 57.5
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.2e-77 293.9 255 58.8
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 6.0e-77 291.6 224 65.6
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.0e-76 290.8 226 62.4
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 1.0e-76 290.8 254 59.4
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.3e-76 290.4 225 64.4
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 1.1e-75 287.3 224 62.9
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 1.5e-75 287.0 227 63.9
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 1.5e-75 287.0 250 58.0
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 2.5e-75 286.2 226 64.2
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 5.6e-75 285.0 228 61.4
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 9.6e-75 284.3 227 63.0
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.1e-74 283.1 230 62.2
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.6e-74 282.3 223 62.8
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.4e-73 280.4 239 59.8
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.8e-73 280.0 250 59.6
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.8e-73 280.0 229 62.0
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.8e-73 280.0 246 58.5
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.4e-73 279.6 253 58.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 3.1e-73 279.3 223 61.9
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.1e-73 279.3 190 70.5
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.3e-73 278.5 245 58.0
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.2e-72 277.3 233 59.7
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 2.6e-72 276.2 264 54.5
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 3.4e-72 275.8 231 60.6
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.4e-72 275.8 233 58.8
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.4e-72 275.4 228 60.1
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.4e-72 275.4 228 60.1
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 5.8e-72 275.0 225 60.9
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 5.8e-72 275.0 246 58.1
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 5.8e-72 275.0 226 61.1
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 7.6e-72 274.6 227 60.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 7.6e-72 274.6 217 64.5
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.9e-72 274.2 228 60.1
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 9.9e-72 274.2 230 60.4
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.7e-71 273.5 226 60.6
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 2.2e-71 273.1 270 55.6
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 4.9e-71 271.9 230 64.3
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 8.4e-71 271.2 259 56.0
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 8.4e-71 271.2 223 63.7
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.4e-70 270.4 250 56.0
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.9e-70 270.0 251 59.0
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 4.2e-70 268.9 231 56.7
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 1.2e-69 267.3 207 64.3
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 3.5e-69 265.8 262 55.0
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 4.6e-69 265.4 224 57.1
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 6.0e-69 265.0 206 64.1
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.0e-68 264.2 224 56.7
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.0e-68 264.2 223 60.1
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.3e-68 263.8 288 51.0
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.7e-68 263.5 223 58.7
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 1.7e-68 263.5 207 63.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.1e-68 261.9 239 55.2
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 8.7e-68 261.2 246 56.1
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.9e-67 260.0 237 55.3
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 2.5e-67 259.6 229 62.9
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.3e-67 258.8 284 50.0
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 1.6e-66 256.9 242 54.1
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.6e-66 256.9 223 60.1
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 2.1e-66 256.5 229 62.0
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.8e-66 256.1 274 51.1
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.8e-65 253.4 252 54.8
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.4e-65 253.1 249 58.6
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 5.8e-64 248.4 232 54.7
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 7.6e-64 248.1 233 55.8
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.3e-63 247.3 331 44.4
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.2e-63 246.5 209 59.3
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 6.4e-63 245.0 209 59.3
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.4e-62 243.0 223 52.5
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 2.4e-62 243.0 206 58.7
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 4.2e-62 242.3 286 46.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.2e-62 242.3 223 56.1
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 5.5e-62 241.9 240 52.9
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 7.1e-62 241.5 232 53.4
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 9.3e-62 241.1 203 60.1
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 2.1e-61 240.0 203 59.6
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 5.1e-60 235.3 160 70.0
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.2e-53 214.2 186 52.2
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.8e-52 210.3 240 48.3
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 6.7e-52 208.4 247 44.9
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.1e-50 203.4 225 49.8
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 3.7e-50 202.6 230 48.3
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 9.3e-46 188.0 201 47.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.3e-44 183.3 242 43.8
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 4.8e-34 149.1 171 42.1
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.2e-32 144.4 205 35.1
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 2.2e-31 140.2 131 53.4
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 3.1e-25 119.8 142 38.7
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.2e-22 109.4 185 37.8
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.4e-17 94.4 68 64.7
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 5.9e-08 62.4 128 35.9


User provided reference genes

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