Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 2.0e-159 565.8 312 100.0
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 2.4e-120 436.0 335 76.4
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 5.1e-115 418.3 332 76.2
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 6.7e-115 417.9 331 75.8
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 6.1e-100 368.2 331 68.9
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 2.3e-99 366.3 331 68.3
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.6e-76 290.4 340 56.2
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.2e-72 276.2 237 70.5
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 9.2e-72 274.6 341 54.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.2e-56 223.0 319 48.0
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.5e-53 213.4 344 47.1
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.4e-51 207.6 221 63.3
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 3.4e-50 203.0 249 59.0
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.1e-44 183.7 330 41.5
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.3e-41 174.5 342 40.4
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.1e-38 162.5 372 36.6
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.3e-37 159.8 356 39.9
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 3.6e-36 156.4 341 37.0
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.1e-35 153.3 327 38.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 2.9e-33 146.7 295 38.3
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 4.2e-32 142.9 315 37.5
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.2e-31 141.4 314 38.2
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 2.1e-31 140.6 316 38.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 3.5e-31 139.8 317 38.2
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 4.6e-31 139.4 322 37.9
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 7.9e-31 138.7 353 34.6
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-30 137.9 316 38.0
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.3e-27 125.9 279 39.1
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 8.7e-22 108.6 387 31.5
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.1e-20 104.0 303 31.7
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.4e-19 100.5 290 31.7
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 3.4e-18 96.7 314 31.8
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.8e-18 95.9 79 65.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 7.1e-16 89.0 374 26.5
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.2e-15 88.2 462 24.0
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.7e-15 87.0 366 29.0
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 6.7e-14 82.4 457 26.3
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 8.7e-14 82.0 366 26.2
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.1e-13 81.6 105 43.8
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 4.3e-13 79.7 362 25.4
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 9.7e-13 78.6 219 34.7
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 9.7e-13 78.6 206 34.5
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 9.7e-13 78.6 69 56.5
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.6e-12 77.8 97 44.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 1.6e-12 77.8 455 26.4
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.6e-12 77.8 308 27.9
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 2.2e-12 77.4 461 23.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.2e-12 77.4 502 24.1
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.8e-12 77.0 100 43.0
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 3.7e-12 76.6 72 54.2
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.8e-12 76.3 73 54.8
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 4.8e-12 76.3 470 26.4
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 6.3e-12 75.9 501 25.1
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 6.3e-12 75.9 96 46.9
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.3e-12 75.9 96 46.9
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 6.3e-12 75.9 75 52.0
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 8.2e-12 75.5 75 52.0
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.2e-12 75.5 96 45.8
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.1e-11 75.1 386 26.2
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.4e-11 74.7 75 56.0
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.4e-11 74.7 392 25.3
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.4e-11 74.7 111 40.5
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 1.8e-11 74.3 136 36.8
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.4e-11 73.9 507 25.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 4.1e-11 73.2 72 54.2
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 4.1e-11 73.2 117 41.9
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 5.3e-11 72.8 72 50.0
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 6.9e-11 72.4 472 25.8
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 6.9e-11 72.4 73 52.1
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 9.0e-11 72.0 479 24.6
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 9.0e-11 72.0 173 33.5
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 9.0e-11 72.0 75 53.3
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 9.0e-11 72.0 75 53.3
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 1.5e-10 71.2 72 44.4
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.5e-10 71.2 73 50.7
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.5e-10 71.2 73 50.7
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.0e-10 70.9 75 48.0
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.0e-10 70.9 75 52.0
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.0e-10 70.9 73 47.9
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 2.0e-10 70.9 141 34.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 3.4e-10 70.1 75 48.0
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 4.5e-10 69.7 75 50.7
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 4.5e-10 69.7 482 24.9
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 4.5e-10 69.7 168 33.3
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 4.5e-10 69.7 73 45.2
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 5.9e-10 69.3 73 52.1
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 7.6e-10 68.9 74 48.6
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 7.6e-10 68.9 221 29.4
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.0e-09 68.6 77 45.5
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.0e-09 68.6 63 50.8
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.3e-09 68.2 109 43.1
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.7e-09 67.8 84 39.3
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.7e-09 67.8 73 47.9
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.7e-09 67.8 221 29.4
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.2e-09 67.4 75 49.3
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.9e-09 67.0 214 29.0
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 2.9e-09 67.0 177 30.5
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.8e-09 66.6 466 23.2
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 5.0e-09 66.2 61 54.1
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 5.0e-09 66.2 109 38.5
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 5.0e-09 66.2 73 42.5
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 6.5e-09 65.9 82 45.1
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.1e-08 65.1 75 48.0
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 2.5e-08 63.9 75 45.3
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 3.2e-08 63.5 126 35.7
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 5.5e-08 62.8 75 48.0
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.2e-07 61.6 91 36.3
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.2e-07 61.6 382 24.3
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 1.6e-07 61.2 224 29.9
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 1.6e-07 61.2 70 47.1
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 3.6e-07 60.1 222 30.2
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 7.9e-07 58.9 86 38.4
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.3e-06 58.2 70 50.0
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.0e-06 57.0 134 32.8
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 3.0e-06 57.0 75 41.3
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 3.0e-06 57.0 81 40.7
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 6.7e-06 55.8 66 47.0
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 8.7e-06 55.5 94 41.5


User provided reference genes

Program Settings