Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.8e-68 261.9 140 100.0
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.0e-67 260.0 140 98.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.4e-66 255.0 140 97.9
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 3.4e-66 255.0 139 99.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.5e-66 253.8 139 98.6
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 9.8e-66 253.4 140 97.1
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.7e-65 252.7 139 97.8
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.7e-65 252.7 139 98.6
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 4.9e-65 251.1 140 96.4
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 6.4e-65 250.8 140 96.4
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.1e-64 250.0 140 95.7
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.4e-64 249.6 140 95.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.4e-64 249.6 140 95.7
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.4e-64 249.6 140 95.7
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.5e-61 239.6 140 92.1
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.9e-61 239.2 140 90.7
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.9e-61 239.2 140 91.4
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.5e-61 238.8 140 90.7
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 90.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.3e-61 238.4 140 91.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.3e-61 238.0 140 90.0
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.2e-60 236.5 139 91.4
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.2e-60 236.5 140 90.7
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.2e-60 236.5 140 90.7
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.2e-60 236.5 139 89.9
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.6e-60 236.1 140 90.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.6e-60 236.1 140 90.0
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.6e-60 236.1 140 90.0
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.6e-60 236.1 140 90.0
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.6e-60 236.1 137 92.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.6e-60 236.1 140 90.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.1e-60 235.7 138 90.6
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 4.7e-60 234.6 138 90.6
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 4.7e-60 234.6 138 89.9
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 4.7e-60 234.6 138 90.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 4.7e-60 234.6 138 90.6
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 8.1e-60 233.8 139 89.9
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 8.1e-60 233.8 138 90.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 8.1e-60 233.8 138 90.6
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 8.1e-60 233.8 138 89.9
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.1e-59 233.4 138 90.6
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.4e-59 233.0 139 89.2
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.8e-59 232.6 138 89.1
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.8e-59 232.6 138 89.9
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.8e-59 232.6 140 89.3
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.8e-59 232.6 140 89.3
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 4.0e-59 231.5 139 89.2
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 5.2e-59 231.1 138 89.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 8.9e-59 230.3 140 87.1
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.2e-58 229.9 140 86.4
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.2e-58 229.9 138 88.4
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.2e-58 229.9 138 88.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.5e-58 229.6 140 87.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.0e-58 229.2 140 90.0
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.0e-58 229.2 140 85.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 2.0e-58 229.2 140 85.7
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 2.6e-58 228.8 141 87.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 2.6e-58 228.8 140 85.7
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.6e-58 228.8 139 89.9
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.4e-58 228.4 138 88.4
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.8e-58 227.6 138 90.6
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.8e-58 227.6 138 87.7
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 5.8e-58 227.6 138 86.2
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 5.8e-58 227.6 140 84.3
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 7.5e-58 227.3 140 87.1
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 9.8e-58 226.9 138 89.9
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.8e-58 226.9 140 85.0
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.3e-57 226.5 138 89.9
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.7e-57 226.1 139 88.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.7e-57 226.1 139 87.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.7e-57 226.1 139 87.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.7e-57 226.1 139 87.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-56 223.4 141 84.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-56 223.4 141 84.4
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.4e-56 223.0 139 87.1
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 8.6e-54 213.8 130 88.5
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.6e-52 209.5 119 93.3
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 4.9e-49 198.0 138 75.4
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.6e-47 193.0 113 91.2
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.7e-47 192.2 115 92.2
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.5e-45 186.4 140 75.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.8e-43 179.5 111 86.5
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.0e-43 178.3 149 71.1
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 6.9e-43 177.6 138 73.9
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.9e-43 177.2 138 72.5
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 8.9e-43 177.2 112 86.6
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.9e-41 171.4 142 64.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.4e-40 169.9 141 68.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 7.8e-39 164.1 139 71.9
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 9.6e-37 157.1 91 89.0
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.7e-33 146.4 96 85.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.7e-33 146.4 107 79.4
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 6.4e-33 144.4 89 89.9
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 6.4e-33 144.4 89 89.9
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 2.4e-32 142.5 89 88.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 3.2e-32 142.1 88 89.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.0e-30 135.6 139 56.8
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.9e-23 110.9 109 56.9
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 3.7e-20 102.1 124 45.2
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 4.8e-20 101.7 135 43.7
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.9e-17 91.7 92 60.9
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.2e-15 87.0 127 38.6
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 7.4e-13 77.8 46 91.3
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.1e-12 76.3 52 80.8
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.2e-10 70.5 44 81.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.3e-09 67.0 45 77.8


User provided reference genes

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