Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2103.6 1066 100.0
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 2038.1 1066 97.0
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2036.9 1066 96.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2035.8 1066 96.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2033.1 1066 96.8
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 2033.1 1066 96.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 2012.3 1070 95.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1982.6 1070 93.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1979.5 1070 93.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1966.0 1067 92.2
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1964.1 1071 91.8
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1961.0 1070 92.0
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1855.1 1104 85.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1807.7 1085 82.7
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1779.2 1064 83.4
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1667.9 1075 76.1
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1613.2 1087 74.1
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1089 73.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1083 72.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1601.6 1089 73.6
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1075 74.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1076 74.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1592.8 1087 72.5
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1591.2 1090 72.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1087 72.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1079 73.0
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1585.5 1079 72.8
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1585.5 1077 73.2
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1582.4 1093 72.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1082 73.2
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1068 72.8
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1086 71.8
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1080 72.3
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1076 73.1
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1085 72.4
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1089 71.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1080 72.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1074 72.3
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1083 72.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1081 72.2
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1083 70.9
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1083 71.1
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1074 72.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1086 71.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1556.6 1087 71.4
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1074 72.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1555.0 1074 72.0
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1079 70.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1079 70.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1553.9 1085 71.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1553.1 1091 70.9
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1551.6 1074 71.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1083 71.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1078 71.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1107 70.3
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1079 70.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1084 70.6
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1088 70.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1087 70.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1085 70.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1096 70.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 1085 70.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1087 69.7
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1087 69.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1076 69.9
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1099 68.9
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1085 70.0
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1081 70.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1091 70.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1169 66.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1527.7 1090 68.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1074 71.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1169 66.6
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1517.3 1072 69.4
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1515.0 1075 70.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1513.0 1088 70.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1078 70.3
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1075 69.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1075 70.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1506.5 1105 68.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1505.0 1081 69.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1084 69.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1498.8 1081 68.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1490.3 1075 69.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1487.2 1090 67.2
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1073 69.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1479.9 1077 68.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 1076 68.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1474.9 1142 65.1
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1472.2 1087 68.0
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1470.7 1085 68.3
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1470.7 1082 68.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1075 67.3
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1077 68.0
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1464.1 1076 67.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1077 68.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1462.2 993 72.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1459.1 1019 71.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1458.4 1098 66.3
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1446.8 1073 66.0
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1432.5 1048 67.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 1094 64.7
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1416.7 1082 65.2
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1411.4 995 71.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1411.0 1101 65.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1402.9 1079 65.0
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1396.3 981 71.3
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1371.7 1075 65.4
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1367.8 1098 62.3
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1361.3 1080 65.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1266.9 1075 62.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1245.7 788 77.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 1072 53.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1146.3 1079 52.6
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1130.9 1114 51.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1122.5 1078 52.7
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1119.8 717 76.8
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1119.8 689 79.8
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1119.4 1078 52.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1115.5 671 81.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 4.9e-282 974.9 752 65.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.5e-278 962.6 831 57.6
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.8e-267 924.9 609 74.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.0e-264 914.8 812 57.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.0e-247 859.4 940 48.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.7e-239 831.6 628 68.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.8e-235 818.5 499 79.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.0e-206 723.8 635 59.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 4.0e-191 672.9 973 43.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.0e-159 566.6 429 66.9
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 8.9e-159 565.5 566 53.2
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 8.6e-146 522.3 303 80.9
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.1e-128 464.5 312 71.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 5.1e-106 390.2 383 54.0
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.0e-63 246.9 205 59.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 5.9e-62 243.8 288 46.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.7e-61 242.3 136 78.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.3e-58 231.9 241 51.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.0e-46 192.2 138 60.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.1e-35 155.6 238 41.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 4.6e-30 137.9 133 53.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.1e-28 133.3 72 84.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.9e-28 132.5 156 45.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 8.1e-27 127.1 108 56.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.4e-24 117.1 97 60.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 7.3e-20 104.0 88 56.8
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.5e-12 79.0 49 65.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.6e-11 76.3 81 43.2
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.4e-10 73.2 50 70.0
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.9e-08 65.5 33 90.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 6.4e-08 64.3 120 39.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.4e-07 63.2 39 71.8
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 3.5e-06 58.5 66 50.0


User provided reference genes

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