Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.0e-165 586.6 286 100.0
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 8.9e-122 440.7 296 76.7
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.2e-121 440.3 299 78.6
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 2.0e-121 439.5 301 78.1
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-121 439.1 295 78.0
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.4e-121 438.7 312 75.6
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 5.7e-121 438.0 306 76.8
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 7.5e-121 437.6 307 76.5
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 2.2e-120 436.0 298 75.8
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 6.4e-120 434.5 298 76.2
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 6.4e-120 434.5 299 75.9
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.8e-119 433.0 302 75.5
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.3e-117 426.8 293 75.1
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.1e-116 423.7 295 71.9
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-116 423.3 299 71.6
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 3.3e-116 422.2 295 71.5
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 9.5e-116 420.6 303 71.6
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 3.6e-115 418.7 299 71.6
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 4.7e-115 418.3 292 72.9
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 5.4e-111 404.8 293 70.3
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 7.3e-108 394.4 301 67.8
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 9.5e-108 394.0 293 67.6
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 3.4e-105 385.6 292 67.5
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.8e-105 384.8 291 67.7
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 7.5e-105 384.4 310 63.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.7e-104 383.3 293 65.5
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 2.2e-104 382.9 291 67.4
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 2.9e-104 382.5 295 65.4
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 4.9e-104 381.7 294 66.0
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 8.3e-104 380.9 294 63.6
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 8.3e-104 380.9 294 65.6
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.1e-103 380.6 294 63.6
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.1e-103 380.6 294 66.0
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.1e-103 380.6 289 66.8
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.1e-103 380.6 294 66.0
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.4e-103 380.2 295 65.8
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.4e-103 380.2 293 66.6
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 1.9e-103 379.8 293 65.9
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 1.9e-103 379.8 289 66.8
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 4.1e-103 378.6 295 66.1
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 4.1e-103 378.6 291 67.4
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 9.2e-103 377.5 293 66.9
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 9.2e-103 377.5 291 66.7
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 9.2e-103 377.5 298 64.8
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.6e-102 376.7 292 66.8
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 3.5e-102 375.6 295 64.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 3.5e-102 375.6 291 66.3
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 3.5e-102 375.6 299 65.6
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 4.6e-102 375.2 294 64.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 4.6e-102 375.2 290 66.2
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 4.6e-102 375.2 289 65.7
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 4.6e-102 375.2 299 65.6
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 7.8e-102 374.4 292 66.8
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 1.3e-101 373.6 297 62.3
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.3e-101 373.6 292 66.4
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.7e-101 373.2 294 63.3
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 3.0e-101 372.5 293 66.2
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 3.9e-101 372.1 293 64.5
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 3.9e-101 372.1 289 66.1
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 5.1e-101 371.7 289 65.7
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 6.6e-101 371.3 291 64.9
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 6.6e-101 371.3 289 66.1
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 8.6e-101 370.9 292 65.8
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.5e-100 370.2 316 62.7
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 2.5e-100 369.4 292 65.1
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.3e-100 369.0 292 63.7
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 5.6e-100 368.2 293 65.2
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 5.6e-100 368.2 293 65.2
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 7.3e-100 367.9 293 65.5
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 1.2e-99 367.1 288 66.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 2.1e-99 366.3 289 66.1
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 2.1e-99 366.3 294 63.6
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.6e-99 365.5 289 62.3
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 8.1e-99 364.4 294 65.3
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.8e-98 363.2 297 60.9
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 2.3e-98 362.8 291 61.5
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 4.0e-98 362.1 297 60.9
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 4.0e-98 362.1 297 60.9
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 2.0e-97 359.8 289 65.1
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 2.6e-97 359.4 289 65.1
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.4e-97 359.0 324 59.9
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 3.4e-97 359.0 280 66.4
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 5.8e-97 358.2 292 61.6
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 9.9e-97 357.5 283 65.7
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.7e-96 356.7 289 64.0
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 3.7e-96 355.5 291 63.2
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.9e-96 355.1 308 60.1
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 8.4e-96 354.4 291 63.2
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.1e-95 354.0 292 62.3
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.1e-94 349.7 290 61.7
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 3.5e-94 349.0 283 62.9
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.0e-93 347.4 289 64.0
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 2.3e-93 346.3 291 60.1
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.0e-93 345.9 270 65.9
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.0e-93 345.9 334 55.4
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 5.1e-93 345.1 337 56.1
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.1e-92 344.0 291 62.2
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 1.2e-91 340.5 293 60.8
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.1e-90 337.4 313 58.5
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.4e-90 337.0 289 60.2
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.1e-90 335.9 294 59.5
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 3.1e-90 335.9 224 77.2
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 8.9e-90 334.3 292 59.2
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 9.9e-89 330.9 291 58.4
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 4.9e-88 328.6 284 59.9
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 3.5e-86 322.4 294 58.5
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 3.6e-83 312.4 370 49.2
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 3.1e-82 309.3 281 60.1
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.2e-80 303.1 295 54.6
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.8e-80 302.4 240 65.0
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 8.7e-77 291.2 230 67.0
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 2.5e-76 289.7 230 64.3
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 4.3e-76 288.9 296 50.3
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 6.4e-72 275.0 179 74.9
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.4e-72 275.0 228 61.8
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 9.3e-71 271.2 179 73.2
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 4.8e-67 258.8 290 49.7
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 8.1e-67 258.1 296 48.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.6e-65 253.1 178 69.1
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.6e-65 253.1 178 69.1
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.1e-61 238.8 238 54.6
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 4.1e-58 229.2 153 75.2
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 4.5e-57 225.7 151 68.9
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 6.5e-56 221.9 313 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.5e-55 219.9 237 51.5
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 3.6e-54 216.1 294 43.2
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 8.7e-53 211.5 130 76.2
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 4.1e-42 176.0 274 40.9
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 9.1e-42 174.9 185 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.4e-39 167.5 201 48.8
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 3.8e-24 116.3 200 36.5
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 9.4e-23 111.7 290 32.8
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.7e-22 110.2 88 62.5
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 8.8e-21 105.1 110 52.7
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 1.7e-19 100.9 229 33.2
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 7.0e-18 95.5 86 55.8
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.3e-13 80.5 44 81.8
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 4.1e-10 69.7 79 46.8
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 3.6e-06 56.6 77 44.2


User provided reference genes

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