Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.6e-206 722.6 400 100.0
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.1e-161 572.8 403 83.4
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 2.3e-160 569.3 403 83.1
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 3.9e-160 568.5 417 80.3
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.7e-159 564.7 399 83.2
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.8e-152 543.1 416 77.6
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.3e-150 537.0 421 78.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.1e-149 533.9 403 77.2
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.4e-149 533.5 410 76.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 7.0e-149 531.2 408 77.5
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.0e-148 529.6 415 76.9
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-148 529.6 415 76.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 7.2e-146 521.2 406 75.6
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.8e-144 516.5 401 76.6
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 4.0e-144 515.4 409 75.1
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 4.0e-144 515.4 395 79.0
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.6e-113 412.5 428 60.3
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.1e-113 411.4 428 60.0
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.3e-110 404.1 436 58.5
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 3.7e-110 402.5 448 57.6
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.3e-110 401.4 417 58.8
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.5e-108 396.0 425 58.1
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-107 394.4 432 58.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.7e-107 393.7 417 58.3
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 3.0e-107 392.9 438 57.3
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.0e-107 392.9 449 56.1
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 6.6e-107 391.7 460 55.2
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.6e-107 391.3 460 53.9
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 9.5e-106 387.9 420 57.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.8e-105 386.3 459 54.7
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.8e-105 386.3 463 54.9
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 4.7e-105 385.6 446 56.5
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 8.1e-105 384.8 438 56.6
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-104 383.3 413 57.9
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.2e-104 382.1 458 55.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 6.8e-104 381.7 431 56.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 2.0e-103 380.2 438 54.1
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 9.9e-103 377.9 478 52.1
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.3e-102 377.5 430 55.8
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.2e-102 376.7 426 56.8
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.9e-102 376.3 408 58.6
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 3.7e-102 375.9 437 56.3
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.4e-102 375.2 453 54.3
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 6.4e-102 375.2 451 55.0
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.2e-101 372.9 411 60.3
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.2e-101 372.9 442 54.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 3.2e-101 372.9 464 52.6
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.6e-100 370.5 425 57.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.1e-98 364.4 432 53.7
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 1.5e-98 364.0 460 52.4
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.5e-98 364.0 427 54.6
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.5e-98 364.0 297 71.0
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 9.6e-98 361.3 490 48.6
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.1e-97 360.1 431 54.5
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.6e-97 359.4 447 53.7
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 4.7e-97 359.0 297 70.4
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.1e-96 357.8 429 55.5
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.5e-95 354.0 315 68.3
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 2.6e-95 353.2 407 54.1
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.6e-95 353.2 424 53.8
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 4.4e-95 352.4 433 53.6
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 7.6e-95 351.7 414 54.8
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 7.6e-95 351.7 289 69.2
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.8e-94 349.4 461 50.5
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.9e-93 347.1 459 52.1
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 9.3e-93 344.7 440 51.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.2e-92 344.4 403 53.8
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.5e-92 342.8 444 52.3
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.5e-92 342.8 460 52.4
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.3e-91 340.1 391 56.0
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 8.7e-91 338.2 427 49.9
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 8.7e-91 338.2 273 70.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 2.8e-89 333.2 441 50.8
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.8e-88 330.5 434 52.8
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 3.1e-88 329.7 412 52.2
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 5.8e-87 325.5 394 53.8
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.9e-85 320.5 541 44.9
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 9.3e-85 318.2 401 51.6
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.5e-84 316.2 461 48.6
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 6.0e-84 315.5 424 50.2
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.3e-83 313.5 477 46.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.6e-83 312.0 341 56.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 8.7e-83 311.6 444 48.0
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 8.7e-83 311.6 434 49.8
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.9e-82 310.5 332 56.9
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 9.3e-77 291.6 424 45.8
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 9.3e-77 291.6 409 49.4
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.6e-76 290.8 405 46.7
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 2.7e-76 290.0 403 49.6
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 4.3e-74 282.7 439 45.8
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.1e-72 278.1 462 45.2
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 3.1e-72 276.6 463 45.6
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-70 271.2 457 43.8
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.4e-69 267.7 418 45.5
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 3.5e-68 263.1 262 62.2
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.5e-66 256.9 469 42.9
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 4.1e-64 249.6 426 44.6
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.6e-63 246.9 290 55.5
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 3.8e-62 243.0 451 43.5
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 6.5e-62 242.3 405 41.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 4.2e-61 239.6 228 61.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 4.2e-61 239.6 446 42.6
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 4.2e-61 239.6 447 40.9
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.3e-59 234.6 428 41.1
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 2.3e-59 233.8 435 42.3
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 3.4e-55 219.9 257 49.4
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.9e-48 195.7 292 48.3
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.2e-44 184.9 315 40.3
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 5.2e-43 179.5 366 38.3
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.6e-42 177.2 371 36.7
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 3.3e-42 176.8 190 62.1
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 3.3e-42 176.8 190 62.1
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.3e-33 148.3 183 54.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.8e-33 147.1 340 35.0
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.7e-30 137.9 371 36.4
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.7e-28 129.8 225 43.1
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.2e-21 107.1 90 67.8
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.0e-19 100.1 182 42.3
C03p51840 Brassica napus HOM05D005934 ORTHO05D005165 2.6e-18 97.4 129 53.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 4.1e-16 90.1 94 56.4
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 4.1e-16 90.1 94 56.4
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.3e-14 84.3 318 30.5
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.9e-14 84.0 171 41.5
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.1e-13 82.0 158 43.0
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.2e-10 72.0 322 29.5
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.0e-10 71.2 87 51.7
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.6e-10 70.9 50 74.0
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.8e-08 64.7 252 31.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 7.8e-07 59.3 81 48.1


User provided reference genes

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