Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.7e-103 378.6 188 100.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.1e-93 346.7 188 90.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.6e-93 345.5 188 90.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 8.2e-92 340.5 188 88.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.1e-91 338.2 188 88.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 9.1e-91 337.0 188 89.9
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.7e-89 332.8 189 87.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.1e-88 330.1 188 87.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-87 326.6 188 88.8
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 3.6e-87 325.1 197 85.8
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.0e-86 322.0 188 85.1
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.0e-85 319.3 189 84.7
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 5.7e-85 317.8 195 85.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.3e-84 316.6 188 84.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.5e-80 302.4 189 82.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 8.8e-78 293.9 188 75.5
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 4.7e-71 271.6 205 67.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 4.0e-62 241.9 189 63.0
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 4.4e-61 238.4 184 63.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.2e-60 236.1 189 63.5
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.7e-60 235.3 194 62.9
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.3e-60 234.2 185 62.7
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.8e-59 233.0 185 62.2
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.4e-59 231.5 191 61.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 9.2e-59 230.7 114 96.5
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-58 230.3 188 63.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.7e-58 229.2 185 61.6
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.5e-58 228.4 185 61.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.9e-58 228.0 186 62.9
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.9e-58 228.0 186 61.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.3e-57 226.9 185 61.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 60.5
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.3e-57 226.1 185 60.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.8e-57 225.3 192 58.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.8e-57 225.3 185 61.1
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 5.0e-57 224.9 189 59.3
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.1e-56 223.8 186 60.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-56 223.4 185 60.0
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.5e-56 223.4 185 60.0
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 3.3e-56 222.2 185 60.0
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.3e-56 222.2 190 58.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 5.6e-56 221.5 151 68.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.6e-56 221.5 185 62.2
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 7.3e-56 221.1 221 51.6
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.2e-55 220.3 185 57.8
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.2e-55 220.3 141 70.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.6e-55 219.9 185 61.6
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.7e-55 218.4 189 59.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.7e-55 218.4 191 59.2
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.0e-54 217.2 186 57.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-54 217.2 154 70.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.3e-54 216.1 175 62.3
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.0e-54 215.7 143 69.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-54 215.7 128 77.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.0e-54 215.7 191 58.6
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.0e-54 215.3 175 61.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 5.2e-54 214.9 185 57.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.8e-54 214.5 141 68.8
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 6.8e-54 214.5 128 76.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.8e-54 214.5 143 68.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.5e-53 213.4 141 70.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.0e-53 213.0 187 57.2
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-53 213.0 191 59.2
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.7e-53 211.5 185 58.4
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.7e-53 211.5 185 57.3
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 5.7e-53 211.5 185 58.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 7.5e-53 211.1 189 56.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.8e-53 210.7 186 58.1
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.7e-52 209.9 153 62.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-52 209.5 186 57.5
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.9e-52 209.1 137 70.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.9e-52 209.1 186 55.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 4.9e-52 208.4 185 56.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.9e-52 208.4 151 64.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 4.9e-52 208.4 140 68.6
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.4e-52 208.0 189 58.2
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 8.3e-52 207.6 160 63.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.1e-51 207.2 143 67.8
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.1e-51 207.2 189 56.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.1e-51 207.2 189 57.1
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-51 206.8 141 66.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 55.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 56.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.2e-51 205.7 145 67.6
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.1e-51 205.3 168 59.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.4e-51 204.9 189 56.6
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 7.0e-51 204.5 140 65.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 9.2e-51 204.1 137 67.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.2e-50 203.8 182 56.0
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.6e-50 203.4 183 55.7
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.0e-50 203.0 187 55.1
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.7e-50 202.6 195 55.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.7e-50 202.6 129 72.1
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.5e-50 202.2 189 54.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.5e-50 202.2 130 72.3
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.6e-50 201.8 145 66.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.6e-50 201.8 193 54.9
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.8e-50 201.1 189 55.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 7.8e-50 201.1 185 53.0
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.0e-49 200.7 150 62.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.0e-49 200.7 189 55.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.0e-49 200.7 186 54.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.7e-49 199.9 186 53.8
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.3e-49 199.5 189 55.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 8.6e-49 197.6 135 68.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.1e-48 197.2 184 54.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.5e-48 196.8 230 50.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.8e-47 192.6 185 52.4
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 3.6e-47 192.2 129 69.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 8.0e-47 191.0 151 62.3
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.1e-46 190.7 141 63.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.3e-46 189.5 163 58.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.0e-46 188.7 167 59.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 6.8e-46 188.0 190 52.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 8.9e-46 187.6 115 70.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.2e-45 187.2 254 44.1
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 4.4e-45 185.3 129 68.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 8.3e-44 181.0 141 61.7
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.2e-43 179.1 159 58.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.6e-42 176.8 128 68.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 4.6e-42 175.3 278 40.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.9e-40 169.9 156 56.4
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 9.5e-40 167.5 116 65.5
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 5.8e-37 158.3 116 62.9
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.1e-35 152.1 72 95.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-34 150.2 124 54.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-32 143.7 87 70.1
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.9e-32 143.3 125 49.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.5e-29 133.7 90 68.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 5.8e-29 131.7 116 53.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.8e-28 129.0 142 53.5
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.4e-28 128.3 86 66.3
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.9e-27 126.7 130 53.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.2e-26 124.0 79 67.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.1e-22 110.9 65 72.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.1e-22 109.4 113 54.0
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 4.0e-22 109.0 103 45.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 6.9e-22 108.2 72 62.5
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.7e-20 103.6 132 37.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 3.2e-19 99.4 117 47.0
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.0e-17 92.8 62 64.5
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.1e-11 74.3 92 45.7
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.6e-07 60.5 78 38.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-06 57.4 35 68.6


User provided reference genes

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