Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23997 Brassica carinata HOM05D000236 ORTHO05D032778 3.1e-63 245.0 126 100.0
BraA02t06286Z Brassica rapa HOM05D000236 ORTHO05D000192 8.3e-40 167.2 147 70.1
A02p12220 Brassica napus HOM05D000236 ORTHO05D000192 8.6e-37 157.1 148 66.2
C02p20320 Brassica napus HOM05D000236 ORTHO05D000192 4.1e-31 138.3 148 60.8
BcaC01g06132 Brassica carinata HOM05D000236 ORTHO05D000192 4.6e-30 134.8 128 65.6
BolC3t14283H Brassica oleracea HOM05D000236 ORTHO05D000192 4.6e-30 134.8 128 65.6
A03p16070 Brassica napus HOM05D000236 ORTHO05D000192 1.7e-29 132.9 129 63.6
BraA03t10898Z Brassica rapa HOM05D000236 ORTHO05D000192 1.7e-29 132.9 129 63.6
AL7G27810 Arabidopsis lyrata HOM05D000236 ORTHO05D000192 4.0e-26 121.7 128 57.8
A10p09530 Brassica napus HOM05D000236 ORTHO05D000192 5.2e-26 121.3 125 63.2
BraA10t43028Z Brassica rapa HOM05D000236 ORTHO05D000192 5.2e-26 121.3 125 63.2
BcaB08g35511 Brassica carinata HOM05D000236 ORTHO05D000192 8.9e-26 120.6 124 61.3
BolC2t08166H Brassica oleracea HOM05D000236 ORTHO05D000192 8.9e-26 120.6 140 57.1
C03p18920 Brassica napus HOM05D000236 ORTHO05D000192 1.2e-25 120.2 130 58.5
AT5G51590 Arabidopsis thaliana HOM05D000236 ORTHO05D000192 1.5e-25 119.8 119 62.2
Sp6g13830 Schrenkiella parvula HOM05D000236 ORTHO05D000192 3.4e-25 118.6 122 62.3
BcaC03g14588 Brassica carinata HOM05D000236 ORTHO05D000192 7.6e-25 117.5 148 54.1
CARHR264390 Cardamine hirsuta HOM05D000236 ORTHO05D000192 7.6e-25 117.5 125 60.8
Carub.0007s1569 Capsella rubella HOM05D000236 ORTHO05D000192 2.2e-24 115.9 133 53.4
Carub.0008s1163 Capsella rubella HOM05D000236 ORTHO05D000192 6.4e-24 114.4 126 58.7
Thhalv10025390m.g Eutrema salsugineum HOM05D000236 ORTHO05D000192 1.4e-23 113.2 122 57.4
AT4G25320 Arabidopsis thaliana HOM05D000236 ORTHO05D000192 2.4e-23 112.5 131 55.0
THA.LOC104825071 Tarenaya hassleriana HOM05D000236 ORTHO05D000192 7.1e-23 110.9 120 58.3
AL8G25870 Arabidopsis lyrata HOM05D000236 ORTHO05D000192 9.3e-23 110.5 123 58.5
THA.LOC104811510 Tarenaya hassleriana HOM05D000236 ORTHO05D000192 1.0e-21 107.1 114 59.6
Aa31sc16G130 Aethionema arabicum HOM05D000236 ORTHO05D000192 1.3e-21 106.7 121 56.2
Aa31sc16G140 Aethionema arabicum HOM05D000236 ORTHO05D000192 1.3e-21 106.7 121 56.2
C07p54190 Brassica napus HOM05D000236 ORTHO05D000192 3.3e-20 102.1 124 52.4
BolC1t02012H Brassica oleracea HOM05D000236 ORTHO05D000192 5.6e-20 101.3 112 54.5
A03p55900 Brassica napus HOM05D000236 ORTHO05D000192 1.6e-19 99.8 128 50.8
BolC7t45905H Brassica oleracea HOM05D000236 ORTHO05D000192 4.8e-19 98.2 125 51.2
Sp7g23340 Schrenkiella parvula HOM05D000236 ORTHO05D000192 6.2e-19 97.8 129 51.9
C01p20850 Brassica napus HOM05D000236 ORTHO05D000192 8.1e-19 97.4 112 54.5
BcaC04g20654 Brassica carinata HOM05D000236 ORTHO05D000192 1.4e-18 96.7 127 55.9
A01p16620 Brassica napus HOM05D000236 ORTHO05D000192 1.4e-18 96.7 116 54.3
C09p40950 Brassica napus HOM05D000236 ORTHO05D000192 1.4e-18 96.7 127 55.9
BolC9t56975H Brassica oleracea HOM05D000236 ORTHO05D000192 1.4e-18 96.7 127 55.9
BraA03t14661Z Brassica rapa HOM05D000236 ORTHO05D000192 1.4e-18 96.7 131 48.9
BcaNung06162 Brassica carinata HOM05D000236 ORTHO05D000192 9.0e-18 94.0 116 51.7
Aa31LG3G8070 Aethionema arabicum HOM05D000236 ORTHO05D000192 1.2e-17 93.6 106 61.3
BraA01t01617Z Brassica rapa HOM05D000236 ORTHO05D000192 3.4e-17 92.0 114 55.3
Thhalv10013637m.g Eutrema salsugineum HOM05D000236 ORTHO05D000192 1.7e-13 79.7 58 70.7
CARHR232730 Cardamine hirsuta HOM05D000236 ORTHO05D032778 3.0e-13 79.0 61 67.2
Duzib205G0980 Durio zibethinus HOM05D000236 ORTHO05D000192 4.8e-11 71.6 67 55.2
BcaB01g04162 Brassica carinata HOM05D000236 ORTHO05D000192 1.1e-10 70.5 112 47.3
Thecc.03G161500 Theobroma cacao HOM05D000236 ORTHO05D000192 5.3e-10 68.2 109 43.1
Gohir.D12G264300 Gossypium hirsutum HOM05D000236 ORTHO05D000192 1.2e-09 67.0 73 53.4
Gorai.008G283600 Gossypium raimondii HOM05D000236 ORTHO05D000192 2.6e-09 65.9 73 52.1
Duzib084G0045 Durio zibethinus HOM05D000236 ORTHO05D000192 3.4e-09 65.5 110 48.2
Gohir.A12G264100 Gossypium hirsutum HOM05D000236 ORTHO05D000192 3.4e-09 65.5 73 52.1
CSS0041281 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 2.9e-08 62.4 113 40.7
Duzib068G1173 Durio zibethinus HOM05D000236 ORTHO05D000192 4.9e-08 61.6 85 44.7
COL.COLO4_14180 Corchorus olitorius HOM05D000236 ORTHO05D000192 8.4e-08 60.8 116 42.2
CSS0008303 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 1.1e-07 60.5 79 49.4
Dinv28534 Davidia involucrata HOM05D000236 ORTHO05D000192 1.4e-07 60.1 109 40.4
GSVIVG01018513001 Vitis vinifera HOM05D000236 ORTHO05D000192 1.4e-07 60.1 57 57.9
BcaC06g32821 Brassica carinata HOM05D000236 ORTHO05D000192 2.4e-07 59.3 57 61.4
Dinv22929 Davidia involucrata HOM05D000236 ORTHO05D000192 2.4e-07 59.3 108 41.7
Actinidia31793 Actinidia chinensis HOM05D000236 ORTHO05D000192 7.1e-07 57.8 115 42.6
CsaV3_5G005390 Cucumis sativus L. HOM05D000236 ORTHO05D000192 1.2e-06 57.0 110 40.0
FAN06G1294 Fragaria x ananassa HOM05D000236 ORTHO05D000192 1.2e-06 57.0 88 48.9
FAN18G0580 Fragaria x ananassa HOM05D000236 ORTHO05D000192 1.2e-06 57.0 110 38.2
Eucgr.A02876 Eucalyptus grandis HOM05D000236 ORTHO05D000192 2.7e-06 55.8 89 46.1
RcHm_v2.0_Chr7g0201041 Rosa chinensis HOM05D000236 ORTHO05D000192 2.7e-06 55.8 114 39.5
VMungo0464G1432 Vigna mungo HOM05D000236 ORTHO05D000192 2.7e-06 55.8 59 54.2
MELO3C005419.2 Cucumis melo HOM05D000236 ORTHO05D000192 3.5e-06 55.5 110 39.1
FAN01G1569 Fragaria x ananassa HOM05D000236 ORTHO05D000192 3.5e-06 55.5 88 44.3
Prupe.2G282300 Prunus persica HOM05D000236 ORTHO05D000192 3.5e-06 55.5 109 37.6
Cfa001714 Carpinus fangiana HOM05D000236 ORTHO05D000192 4.6e-06 55.1 112 40.2
FAN03G1116 Fragaria x ananassa HOM05D000236 ORTHO05D000192 4.6e-06 55.1 71 50.7
CSS0014593 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 6.0e-06 54.7 83 45.8
CSS0034245 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 6.0e-06 54.7 83 45.8
Cpa.g.sc3.271 Carica papaya HOM05D000236 ORTHO05D000192 6.0e-06 54.7 110 36.4
Cfa008234 Carpinus fangiana HOM05D000236 ORTHO05D000192 6.0e-06 54.7 42 61.9
Ah.07g208260 Amaranthus hybridus HOM05D000236 ORTHO05D000192 7.9e-06 54.3 72 51.4
EL10Ac3g05794 Beta vulgaris HOM05D000236 ORTHO05D000192 7.9e-06 54.3 62 50.0
Ca_23853_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 7.9e-06 54.3 116 40.5
Glyma.16G204400 Glycine max HOM05D000236 ORTHO05D000192 7.9e-06 54.3 53 56.6


User provided reference genes

Program Settings