Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 6.4e-263 910.2 465 100.0
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.5e-139 498.8 524 54.4
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 5.5e-137 491.9 483 53.8
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 9.3e-137 491.1 532 50.2
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.7e-136 489.6 515 51.5
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.3e-135 487.3 524 51.3
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.0e-135 486.1 485 53.0
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 8.7e-135 484.6 541 49.5
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 3.3e-134 482.6 524 51.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 7.4e-134 481.5 486 53.7
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.2e-133 478.4 515 53.4
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.8e-132 476.9 538 50.6
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 7.6e-131 471.5 583 49.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.1e-128 463.4 512 50.8
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.8e-119 433.7 488 49.4
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 2.8e-117 426.4 320 71.2
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 2.9e-114 416.4 484 46.1
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.4e-105 387.5 474 45.8
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 9.4e-105 384.8 516 43.2
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.2e-104 384.4 485 43.5
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 3.6e-104 382.9 473 45.5
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.7e-104 382.5 491 43.8
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 3.0e-103 379.8 487 44.1
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.7e-101 374.0 581 40.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 8.2e-101 371.7 477 43.4
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 7.0e-100 368.6 510 41.8
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 7.0e-100 368.6 510 44.1
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 7.0e-100 368.6 493 43.0
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 7.0e-100 368.6 483 44.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 3.5e-99 366.3 553 40.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 5.9e-99 365.5 437 46.0
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-98 364.4 483 43.5
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.3e-98 364.4 510 42.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.7e-98 364.0 469 42.6
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.7e-98 364.0 549 41.7
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.2e-98 363.6 486 41.6
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 5.0e-98 362.5 482 43.4
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 8.5e-98 361.7 536 39.2
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-97 360.9 468 43.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.5e-97 360.9 481 43.5
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.5e-97 360.1 467 42.4
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 4.2e-97 359.4 484 41.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.2e-96 357.8 481 43.7
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.2e-96 357.8 469 42.6
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.6e-96 356.3 515 40.6
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 1.0e-95 354.8 472 42.4
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-95 354.4 471 42.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.0e-95 353.2 473 43.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.0e-95 353.2 533 38.8
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 5.2e-95 352.4 487 40.9
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.7e-95 352.1 541 39.0
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.0e-94 350.5 487 40.5
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.6e-94 350.1 468 42.3
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 4.4e-94 349.4 528 39.4
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 1.3e-93 347.8 516 39.7
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 4.8e-93 345.9 569 38.5
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.4e-92 344.4 477 41.3
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.4e-92 344.4 517 40.6
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.8e-92 344.0 483 41.2
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.4e-92 343.6 520 39.4
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 4.1e-92 342.8 395 46.8
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 5.3e-92 342.4 493 40.2
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 7.0e-92 342.0 514 40.7
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.0e-92 342.0 508 40.0
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 9.1e-92 341.7 513 40.2
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.6e-91 340.9 469 42.0
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.2e-90 337.0 480 40.4
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 5.0e-90 335.9 528 40.2
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.9e-89 334.0 515 39.0
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 9.4e-89 331.6 566 36.4
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.6e-88 330.9 469 40.5
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.1e-88 330.5 475 40.2
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 6.1e-88 328.9 525 37.9
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.0e-87 328.2 476 40.3
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.4e-87 327.8 441 42.9
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.4e-87 327.8 568 37.3
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 5.2e-87 325.9 529 38.6
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 8.8e-87 325.1 448 42.2
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.8e-87 325.1 507 38.3
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-86 324.7 526 38.2
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 2.6e-86 323.6 482 39.8
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.4e-86 322.8 537 39.3
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.7e-82 310.8 435 40.5
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 5.0e-82 309.3 534 36.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.4e-79 301.2 486 38.9
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.8e-79 300.8 520 36.2
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 3.7e-77 293.1 433 40.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 6.3e-77 292.4 423 40.7
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 2.4e-76 290.4 478 37.7
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.3e-74 284.6 419 38.7
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.7e-72 276.2 661 30.1
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 4.0e-71 273.1 395 41.3
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 6.8e-71 272.3 492 36.8
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.4e-70 270.0 525 35.8
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.9e-69 266.9 509 32.8
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-68 263.8 501 36.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 4.6e-67 259.6 245 61.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 3.0e-66 256.9 482 33.6
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 8.6e-66 255.4 474 33.3
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.1e-64 250.8 344 43.9
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.6e-64 250.0 298 45.0
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 4.4e-62 243.0 812 26.5
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.2e-60 236.9 321 43.6
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.5e-59 233.4 420 35.7
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 5.0e-58 229.6 519 32.9
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.9e-57 227.6 270 45.9
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.0e-55 219.9 273 44.3
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.7e-53 214.5 279 44.1
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.2e-51 208.4 319 37.6
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.2e-46 191.8 303 38.9
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.7e-45 188.0 560 28.2
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-45 188.0 362 35.9
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.5e-43 180.3 316 37.0
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.4e-36 158.3 390 30.8
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-35 155.2 297 37.7
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.9e-33 147.9 310 33.5
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.3e-32 145.2 291 35.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 9.9e-30 135.6 180 42.2
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.7e-29 134.8 187 39.6
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.5e-27 127.1 144 45.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 6.0e-27 126.3 170 38.2
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.0e-26 125.6 246 34.1
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 8.7e-26 122.5 250 37.2
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 7.4e-25 119.4 152 48.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.4e-25 119.4 194 39.7
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 9.6e-25 119.0 241 34.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.3e-24 118.6 383 26.4
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 9.3e-20 102.4 202 33.7
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.1e-16 91.3 215 32.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.8e-14 83.2 91 47.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.8e-13 80.5 108 38.0
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-11 75.5 200 30.0
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.2e-11 75.5 76 50.0
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.7e-11 74.3 132 34.1
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.7e-11 74.3 130 34.6
C04p19980 Brassica napus HOM05D000751 ORTHO05D040754 4.6e-11 73.6 42 85.7
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.9e-10 70.5 91 47.3
BolC4t23176H Brassica oleracea HOM05D000751 ORTHO05D040754 5.1e-10 70.1 36 94.4
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.8e-07 61.6 165 28.5
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.1e-07 60.5 76 47.4


User provided reference genes

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