Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23992 Brassica carinata HOM05D007548 ORTHO05D009527 8.3e-129 464.2 318 100.0
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 1.4e-96 357.1 325 83.7
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 1.9e-93 346.7 326 83.4
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 1.8e-86 323.6 375 72.5
BraA02t06280Z Brassica rapa HOM05D007548 ORTHO05D009527 1.4e-83 313.9 331 78.9
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 1.4e-67 260.8 349 70.2
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.5e-61 240.7 351 57.0
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 1.5e-58 230.7 348 55.2
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 5.9e-58 228.8 350 54.0
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 1.7e-57 227.3 350 56.6
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 2.3e-54 216.9 354 55.1
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 2.3e-54 216.9 354 55.1
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 2.3e-54 216.9 354 55.1
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 3.3e-53 213.0 354 55.1
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.8e-52 209.9 355 54.6
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 1.1e-51 208.0 354 54.5
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 7.2e-48 195.3 354 53.7
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 3.5e-42 176.4 376 39.9
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 3.4e-21 106.7 354 33.6
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 2.3e-14 84.0 327 29.7
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.2e-13 81.6 344 28.5
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 7.5e-13 79.0 330 27.6
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 8.3e-12 75.5 319 27.9
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 7.0e-11 72.4 324 29.6
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 2.7e-10 70.5 329 27.4
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 1.3e-09 68.2 338 26.6
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 1.1e-08 65.1 329 26.7
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 1.9e-08 64.3 330 25.2
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 2.5e-08 63.9 80 45.0
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 4.3e-08 63.2 329 27.4
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.3e-08 63.2 329 27.4
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.3e-08 63.2 329 27.4
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.3e-08 62.4 330 27.3
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 9.5e-08 62.0 102 44.1
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 2.8e-07 60.5 342 26.3
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 3.6e-07 60.1 330 27.0
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 4.7e-07 59.7 310 24.8
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 4.7e-07 59.7 335 27.5
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 6.2e-07 59.3 330 25.8
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 8.1e-07 58.9 327 25.7
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.4e-06 58.2 154 35.7
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 1.8e-06 57.8 317 29.3
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 1.8e-06 57.8 398 24.4
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 8.9e-06 55.5 98 38.8


User provided reference genes

Program Settings