Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 1.0e-116 423.3 196 100.0
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.2e-103 379.0 195 93.8
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 2.8e-103 378.6 195 94.4
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 3.7e-103 378.3 195 93.8
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 4.8e-103 377.9 195 93.3
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 3.1e-102 375.2 195 93.8
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.2e-98 363.2 195 89.2
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 4.0e-97 358.2 187 89.8
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 3.4e-96 355.1 198 87.4
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 3.4e-96 355.1 198 87.4
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 2.0e-93 345.9 187 88.2
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 7.2e-91 337.4 190 84.2
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.2e-90 336.7 188 84.6
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 2.1e-90 335.9 187 86.1
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 6.1e-90 334.3 187 85.6
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.3e-87 326.6 185 80.0
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 2.4e-78 295.8 188 70.2
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.2e-77 293.5 191 70.7
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.0e-77 292.7 189 67.7
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 2.0e-77 292.7 186 71.0
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 1.7e-76 289.7 191 68.6
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 1.7e-76 289.7 186 68.8
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 3.0e-76 288.9 188 68.6
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 8.6e-76 287.3 185 70.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.5e-75 286.6 185 72.4
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.9e-75 286.2 188 69.1
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.9e-75 286.2 188 69.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 4.3e-75 285.0 188 69.1
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 5.6e-75 284.6 188 69.1
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 9.5e-75 283.9 190 66.3
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 9.5e-75 283.9 192 67.7
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.2e-74 283.5 199 64.8
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.1e-74 282.7 199 64.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 2.1e-74 282.7 188 67.0
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.1e-74 282.7 187 67.9
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 2.1e-74 282.7 187 67.4
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 2.8e-74 282.3 190 65.8
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 2.8e-74 282.3 189 68.8
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 3.6e-74 282.0 193 69.4
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 4.7e-74 281.6 187 67.4
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 4.7e-74 281.6 187 66.8
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 8.0e-74 280.8 199 67.8
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 1.1e-73 280.4 188 64.9
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 1.1e-73 280.4 187 66.8
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 1.1e-73 280.4 185 67.6
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 1.4e-73 280.0 188 66.5
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 1.4e-73 280.0 188 65.4
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 2.3e-73 279.3 194 66.0
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 2.3e-73 279.3 185 66.5
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 3.1e-73 278.9 190 65.8
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 5.2e-73 278.1 188 65.4
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 6.8e-73 277.7 187 66.3
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 6.8e-73 277.7 185 68.6
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 1.5e-72 276.6 185 67.0
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.5e-72 276.6 196 66.3
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.5e-72 276.6 190 66.3
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 1.5e-72 276.6 191 64.9
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.0e-72 276.2 187 67.9
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 2.0e-72 276.2 188 65.4
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 2.6e-72 275.8 194 63.4
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 3.4e-72 275.4 189 66.7
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 7.5e-72 274.2 185 64.9
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 7.5e-72 274.2 190 66.3
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 9.8e-72 273.9 187 65.2
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 9.8e-72 273.9 191 64.4
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.3e-71 273.5 191 64.9
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 2.2e-71 272.7 182 66.5
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 2.2e-71 272.7 185 65.4
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.9e-71 272.3 185 68.1
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.9e-71 272.3 187 65.8
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 3.7e-71 271.9 185 65.4
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.1e-70 270.4 188 64.9
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.4e-70 270.0 188 61.7
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 2.4e-70 269.2 185 64.3
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 7.0e-70 267.7 190 64.2
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 7.0e-70 267.7 186 62.9
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 7.0e-70 267.7 191 63.4
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.6e-69 266.5 189 64.0
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.6e-69 266.5 189 64.6
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.6e-69 266.5 189 64.6
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 1.6e-69 266.5 189 64.6
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 1.6e-69 266.5 193 61.7
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 3.5e-69 265.4 186 65.1
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 3.5e-69 265.4 191 66.5
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 6.0e-69 264.6 191 62.3
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.7e-68 263.1 185 66.5
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 2.3e-68 262.7 186 64.0
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 2.3e-68 262.7 189 61.9
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 6.6e-68 261.2 185 64.9
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.1e-67 260.4 188 60.6
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.9e-67 259.6 189 61.4
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 1.9e-67 259.6 191 62.8
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 5.6e-67 258.1 185 62.7
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 9.5e-67 257.3 187 62.0
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 9.5e-67 257.3 191 62.8
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 3.6e-66 255.4 181 64.6
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 3.6e-66 255.4 185 62.2
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 6.2e-66 254.6 200 57.5
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 2.3e-65 252.7 184 62.5
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 2.3e-65 252.7 184 62.5
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 2.2e-63 246.1 198 60.6
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 6.4e-63 244.6 191 59.7
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 3.3e-59 232.3 185 57.8
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 1.8e-57 226.5 187 56.7
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 2.6e-56 222.6 186 56.5
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 4.4e-56 221.9 186 61.3
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.9e-55 218.4 157 63.7
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.4e-54 214.9 154 61.7
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.4e-54 214.9 154 61.7
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 8.1e-50 201.1 148 61.5
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 4.4e-48 195.3 169 55.6
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 7.6e-48 194.5 139 60.4
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 2.1e-45 186.4 185 45.9
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 2.1e-45 186.4 128 67.2
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.9e-35 153.3 87 71.3
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 1.8e-33 146.7 74 77.0
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 5.1e-12 75.5 158 33.5
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 2.2e-07 60.1 61 37.7


User provided reference genes

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