Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23986 Brassica carinata HOM05D006896 ORTHO05D007622 8.9e-84 313.9 158 100.0
A02p24490 Brassica napus HOM05D006896 ORTHO05D007622 1.2e-69 266.9 141 94.3
C02p38670 Brassica napus HOM05D006896 ORTHO05D007622 1.2e-69 266.9 141 94.3
BolC2t09885H Brassica oleracea HOM05D006896 ORTHO05D007622 1.2e-69 266.9 141 94.3
BraA02t07439Z Brassica rapa HOM05D006896 ORTHO05D007622 1.2e-69 266.9 141 94.3
BcaC03g16098 Brassica carinata HOM05D006896 ORTHO05D007622 6.2e-69 264.6 141 93.6
Thhalv10023695m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 9.9e-59 230.7 155 77.4
C07p10600 Brassica napus HOM05D006896 ORTHO05D007622 1.1e-57 227.3 160 78.1
A07p06970 Brassica napus HOM05D006896 ORTHO05D007622 1.9e-57 226.5 154 80.5
BolC7t41525H Brassica oleracea HOM05D006896 ORTHO05D007622 4.2e-57 225.3 160 77.5
AL6G51750 Arabidopsis lyrata HOM05D006896 ORTHO05D007622 1.7e-55 219.9 158 69.0
BraA07t28487Z Brassica rapa HOM05D006896 ORTHO05D007622 3.0e-55 219.2 145 80.7
Thhalv10028974m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 3.0e-55 219.2 145 75.9
Sp6g01500 Schrenkiella parvula HOM05D006896 ORTHO05D007622 4.0e-52 208.8 143 73.4
Carub.0006s3560 Capsella rubella HOM05D006896 ORTHO05D007622 5.3e-52 208.4 148 68.9
BcaC06g35810 Brassica carinata HOM05D006896 ORTHO05D007622 1.0e-47 194.1 134 77.6
AT4G01590 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 3.9e-47 192.2 144 66.7
BcaB06g28560 Brassica carinata HOM05D006896 ORTHO05D007622 8.1e-45 184.5 180 61.7
THA.LOC104825918 Tarenaya hassleriana HOM05D006896 ORTHO05D007622 4.0e-44 182.2 154 59.1
CARHR250080 Cardamine hirsuta HOM05D006896 ORTHO05D007622 6.9e-44 181.4 141 63.1
Aa31LG5G1310 Aethionema arabicum HOM05D006896 ORTHO05D007622 9.0e-44 181.0 140 63.6
BcaB06g26744 Brassica carinata HOM05D006896 ORTHO05D007622 2.6e-43 179.5 159 65.4
Carub.0003s1963 Capsella rubella HOM05D006896 ORTHO05D007622 2.4e-41 172.9 136 65.4
AT4G35685 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 9.3e-33 144.4 161 52.2
CiPaw.04G076100 Carya illinoinensis HOM05D006896 ORTHO05D007622 2.3e-23 113.2 154 45.5
Eucgr.F03083 Eucalyptus grandis HOM05D006896 ORTHO05D007622 3.0e-23 112.8 160 46.2
Cpa.g.sc25.137 Carica papaya HOM05D006896 ORTHO05D007622 6.7e-23 111.7 157 46.5
Gohir.A09G147400 Gossypium hirsutum HOM05D006896 ORTHO05D007622 6.7e-23 111.7 158 43.7
Ciclev10022257m.g Citrus clementina HOM05D006896 ORTHO05D007622 8.7e-23 111.3 157 44.6
Gorai.006G164500 Gossypium raimondii HOM05D006896 ORTHO05D007622 8.7e-23 111.3 158 43.7
Gohir.D09G143000 Gossypium hirsutum HOM05D006896 ORTHO05D007622 1.5e-22 110.5 158 43.7
Ciclev10026494m.g Citrus clementina HOM05D006896 ORTHO05D007622 7.4e-22 108.2 150 42.7
MD15G1357300 Malus domestica HOM05D006896 ORTHO05D007622 3.7e-21 105.9 158 43.7
PGR102G1058 Punica granatum HOM05D006896 ORTHO05D007622 2.4e-20 103.2 154 43.5
Nitab4.5_0002546g0010 Nicotiana tabacum HOM05D006896 ORTHO05D007622 2.6e-19 99.8 159 42.1
Manes.04G135200 Manihot esculenta HOM05D006896 ORTHO05D007622 7.7e-19 98.2 157 40.1
CANSAT21G0002 Cannabis sativa HOM05D006896 ORTHO05D007622 1.3e-18 97.4 167 41.9
Nitab4.5_0001057g0240 Nicotiana tabacum HOM05D006896 ORTHO05D007622 2.9e-18 96.3 153 41.8
Os07g0611600 Oryza sativa ssp. japonica HOM05D006896 ORTHO05D007622 5.0e-18 95.5 163 36.8
Potri.003G047600 Populus trichocarpa HOM05D006896 ORTHO05D007622 5.0e-18 95.5 154 43.5
MD08G1165000 Malus domestica HOM05D006896 ORTHO05D007622 8.5e-18 94.7 168 40.5
Hund07447 Selenicereus undatus HOM05D006896 ORTHO05D007622 1.9e-17 93.6 152 39.5
GSVIVG01016958001 Vitis vinifera HOM05D006896 ORTHO05D007622 1.9e-17 93.6 154 39.6
TWI75G0052 Tripterygium wilfordii HOM05D006896 ORTHO05D007622 2.5e-17 93.2 146 41.8
Thecc.01G002700 Theobroma cacao HOM05D006896 ORTHO05D007622 3.2e-17 92.8 183 37.2
Cfa015335 Carpinus fangiana HOM05D006896 ORTHO05D007622 9.4e-17 91.3 147 41.5
Cc04_g02450 Coffea canephora HOM05D006896 ORTHO05D007622 2.7e-16 89.7 157 37.6
COL.COLO4_30531 Corchorus olitorius HOM05D006896 ORTHO05D007622 2.3e-15 86.7 155 36.8
Zm00001eb122950 Zea mays HOM05D006896 ORTHO05D007622 3.0e-15 86.3 139 38.1
EL10Ac4g10160 Beta vulgaris HOM05D006896 ORTHO05D007622 5.1e-15 85.5 142 36.6
EL10Ac4g10155 Beta vulgaris HOM05D006896 ORTHO05D007622 6.7e-15 85.1 142 36.6
Haze_24358 Corylus avellana HOM05D006896 ORTHO05D007622 1.1e-14 84.3 168 38.1
Sopen06g034890 Solanum pennellii HOM05D006896 ORTHO05D007622 2.0e-14 83.6 157 37.6
Aqoxy3G03866 Aquilegia oxysepala HOM05D006896 ORTHO05D007622 2.5e-14 83.2 157 37.6
Sabra03G0029600 Salix brachista HOM05D000996 ORTHO05D000858 3.3e-14 82.8 157 37.6
TAR636G1166 Trochodendron aralioides HOM05D006896 ORTHO05D007622 3.3e-14 82.8 159 37.7
QL06p022383 Quercus lobata HOM05D006896 ORTHO05D007622 5.7e-14 82.0 177 34.5
EL10Ac4g10121 Beta vulgaris HOM05D006896 ORTHO05D007622 1.3e-13 80.9 154 35.7
EL10Ac4g10131 Beta vulgaris HOM05D006896 ORTHO05D007622 1.3e-13 80.9 142 34.5
EL10Ac4g10168 Beta vulgaris HOM05D006896 ORTHO05D007622 1.3e-13 80.9 154 35.7
Ah.06g194440 Amaranthus hybridus HOM05D006896 ORTHO05D007622 1.7e-13 80.5 159 37.1
CsaV3_7G035230 Cucumis sativus L. HOM05D006896 ORTHO05D007622 2.8e-13 79.7 136 35.3
EL10Ac4g10129 Beta vulgaris HOM05D006896 ORTHO05D007622 3.7e-13 79.3 142 33.8
Nn1g00183 Nelumbo nucifera HOM05D006896 ORTHO05D007622 8.2e-13 78.2 162 34.6
Phvul.006G182200 Phaseolus vulgaris HOM05D006896 ORTHO05D007622 8.2e-13 78.2 161 39.1
Sed0020352 Sechium edule HOM05D006896 ORTHO05D007622 8.2e-13 78.2 159 37.1
MELO3C024432.2 Cucumis melo HOM05D006896 ORTHO05D007622 1.4e-12 77.4 155 34.2
Cc02_g30070 Coffea canephora HOM05D006896 ORTHO05D007622 1.8e-12 77.0 160 35.6
DCAR_021683 Daucus carota HOM05D006896 ORTHO05D007622 5.3e-12 75.5 152 37.5
Prupe.1G504500 Prunus persica HOM05D006896 ORTHO05D007622 1.5e-11 73.9 136 36.8
Lsat_1_v5_gn_7_60640 Lactuca sativa HOM05D006896 ORTHO05D007622 2.6e-11 73.2 154 36.4
Psat6g044520 Pisum sativum HOM05D006896 ORTHO05D007622 3.4e-11 72.8 157 39.5
Sc15g0001740 Simmondsia chinensis HOM05D006896 ORTHO05D007622 5.9e-11 72.0 157 29.9
Solyc06g083505.1 Solanum lycopersicum HOM05D006896 ORTHO05D007622 7.7e-11 71.6 138 33.3
Prupe.1G582300 Prunus persica HOM05D006896 ORTHO05D007622 1.0e-10 71.2 144 34.7
PGSC0003DMG401020091 Solanum tuberosum HOM05D006896 ORTHO05D007622 2.2e-10 70.1 153 32.7
Lj2g0027443 Lotus japonicus HOM05D006896 ORTHO05D007622 5.0e-10 68.9 146 36.3
CAN.G855.24 Capsicum annuum HOM05D006896 ORTHO05D007622 6.5e-10 68.6 151 35.1
Actinidia05615 Actinidia chinensis HOM05D006896 ORTHO05D007622 8.5e-10 68.2 151 33.8
AagrBONN_evm.TU.Sc2ySwM_344.5457 Anthoceros agrestis HOM05D015888 ORTHO05D007622 7.2e-09 65.1 189 34.9
ClCG09G000270 Citrullus lanatus HOM05D006896 ORTHO05D007622 7.2e-09 65.1 118 36.4
PSO210G5688 Papaver somniferum HOM05D006896 ORTHO05D007622 7.2e-09 65.1 166 36.1
COL.COLO4_18518 Corchorus olitorius HOM05D006896 ORTHO05D007622 1.2e-08 64.3 133 33.8
unitig_27.g25077 Utricularia gibba HOM05D006896 ORTHO05D007622 1.4e-07 60.8 152 31.6
PGSC0003DMG400024908 Solanum tuberosum HOM05D006896 ORTHO05D007622 8.8e-07 58.2 156 30.1
HPP92_023992 Vanilla planifolia HOM05D006896 ORTHO05D007622 1.5e-06 57.4 168 35.1
CiPaw.04G075800 Carya illinoinensis HOM05D006896 ORTHO05D007622 4.4e-06 55.8 133 30.1
FAN27G1591 Fragaria x ananassa HOM05D018050 ORTHO05D022598 5.7e-06 55.5 166 33.7
ECA240G1433 Erigeron canadensis HOM05D006896 ORTHO05D007622 7.4e-06 55.1 160 31.2
RhsimUnG0044500 Rhododendron simsii HOM05D006896 ORTHO05D007622 7.4e-06 55.1 131 27.5
AagrBONN_evm.TU.Sc2ySwM_228.5087 Anthoceros agrestis HOM05D015888 ORTHO05D007622 9.7e-06 54.7 191 31.4
FAN20G0540 Fragaria x ananassa HOM05D018050 ORTHO05D022598 9.7e-06 54.7 166 33.7


User provided reference genes

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