Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 1.2e-65 253.1 129 100.0
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 3.0e-45 185.3 106 89.6
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 3.0e-45 185.3 106 89.6
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 4.0e-45 184.9 106 88.7
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 3.3e-44 181.8 106 87.7
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 2.0e-41 172.6 104 84.6
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 3.5e-41 171.8 107 84.1
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 2.9e-40 168.7 104 85.6
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 6.5e-40 167.5 97 84.5
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 6.5e-40 167.5 104 83.7
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.6e-38 162.9 104 82.7
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 3.6e-38 161.8 102 79.4
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 3.0e-37 158.7 102 82.4
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 6.8e-37 157.5 97 82.5
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 8.8e-37 157.1 97 82.5
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 8.8e-37 157.1 97 82.5
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 8.8e-37 157.1 97 82.5
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.0e-36 156.0 97 81.4
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 3.5e-33 145.2 106 67.9
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 2.3e-32 142.5 106 66.0
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 6.5e-32 141.0 102 67.6
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 6.5e-32 141.0 109 65.1
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.5e-31 139.8 107 64.5
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 1.5e-31 139.8 105 66.7
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 3.2e-31 138.7 103 66.0
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 4.2e-31 138.3 106 64.2
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 5.5e-31 137.9 109 63.3
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 4.7e-30 134.8 105 61.9
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 4.7e-30 134.8 102 65.7
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 4.7e-30 134.8 110 59.1
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 4.7e-30 134.8 129 57.4
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 6.1e-30 134.4 110 62.7
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 8.0e-30 134.0 102 64.7
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 8.0e-30 134.0 111 60.4
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.0e-29 133.7 107 63.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.4e-29 133.3 110 60.0
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 1.8e-29 132.9 110 61.8
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 2.3e-29 132.5 103 67.0
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 2.3e-29 132.5 118 58.5
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 2.3e-29 132.5 103 62.1
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 2.3e-29 132.5 110 60.0
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 3.0e-29 132.1 95 66.3
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 4.0e-29 131.7 111 58.6
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 5.2e-29 131.3 116 59.5
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 8.8e-29 130.6 95 67.4
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 8.8e-29 130.6 102 62.7
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 8.8e-29 130.6 115 60.0
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.2e-28 130.2 111 57.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.5e-28 129.8 100 63.0
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 1.5e-28 129.8 103 65.0
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.5e-28 129.8 116 58.6
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.0e-28 129.4 111 56.8
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 2.0e-28 129.4 111 57.7
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 2.0e-28 129.4 104 62.5
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 2.6e-28 129.0 110 57.3
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 3.4e-28 128.6 103 66.0
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 3.4e-28 128.6 110 58.2
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 4.4e-28 128.3 102 61.8
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 5.7e-28 127.9 103 64.1
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 5.7e-28 127.9 103 65.0
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.7e-28 127.9 169 46.2
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 5.7e-28 127.9 103 65.0
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 7.5e-28 127.5 107 59.8
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 7.5e-28 127.5 102 60.8
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 7.5e-28 127.5 104 62.5
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 9.8e-28 127.1 112 59.8
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 9.8e-28 127.1 104 61.5
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 1.3e-27 126.7 99 62.6
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.3e-27 126.7 103 64.1
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 1.7e-27 126.3 104 61.5
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 2.2e-27 125.9 101 61.4
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 2.8e-27 125.6 108 58.3
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 3.7e-27 125.2 103 61.2
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 3.7e-27 125.2 102 63.7
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 3.7e-27 125.2 102 58.8
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 4.9e-27 124.8 108 60.2
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 4.9e-27 124.8 103 61.2
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 4.9e-27 124.8 103 61.2
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 6.3e-27 124.4 99 60.6
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 8.3e-27 124.0 110 55.5
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 8.3e-27 124.0 99 62.6
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 8.3e-27 124.0 99 62.6
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 8.3e-27 124.0 103 64.1
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.4e-26 123.2 104 56.7
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.4e-26 122.5 103 62.1
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.4e-26 122.5 99 61.6
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.4e-26 122.5 99 61.6
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 3.1e-26 122.1 103 58.3
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 4.1e-26 121.7 99 61.6
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 4.1e-26 121.7 105 56.2
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 5.4e-26 121.3 106 57.5
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.4e-26 121.3 101 60.4
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 5.4e-26 121.3 103 63.1
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.2e-25 120.2 102 56.9
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.2e-25 120.2 108 56.5
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 1.2e-25 120.2 103 62.1
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.6e-25 119.8 102 56.9
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.6e-25 119.8 99 58.6
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 1.6e-25 119.8 101 58.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.5e-25 118.6 102 55.9
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 4.5e-25 118.2 129 49.6
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 5.9e-25 117.9 102 56.9
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 5.9e-25 117.9 110 56.4
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 7.8e-25 117.5 104 58.7
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 7.8e-25 117.5 105 57.1
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 7.8e-25 117.5 105 57.1
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 7.8e-25 117.5 102 57.8
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 7.8e-25 117.5 101 59.4
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.7e-24 116.3 98 62.2
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 2.9e-24 115.5 70 81.4
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.9e-24 115.5 97 60.8
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 3.8e-24 115.2 95 63.2
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 3.8e-24 115.2 101 55.4
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.5e-23 113.2 100 58.0
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 5.6e-23 111.3 99 59.6
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 5.6e-23 111.3 105 57.1
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 9.5e-23 110.5 98 57.1
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 2.1e-22 109.4 112 50.0
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 8.0e-22 107.5 102 52.0
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 1.2e-20 103.6 105 53.3
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.2e-19 99.4 66 78.8
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 9.2e-18 94.0 83 56.6
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.1e-15 87.0 65 64.6
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 2.5e-15 85.9 98 50.0
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 7.3e-15 84.3 103 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 2.3e-13 79.3 100 44.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.2e-12 77.0 99 44.4
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 7.5e-12 74.3 102 39.2
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 2.2e-11 72.8 61 54.1
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 1.1e-10 70.5 73 42.5
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 1.4e-10 70.1 103 44.7
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 2.7e-09 65.9 73 45.2
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 5.0e-08 61.6 72 45.8
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 6.6e-08 61.2 79 44.3


User provided reference genes

Program Settings