Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 3.0e-157 558.5 291 100.0
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 4.3e-47 192.6 108 88.9
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 5.6e-47 192.2 109 89.0
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 3.6e-46 189.5 109 88.1
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 4.0e-45 186.0 109 87.2
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 1.5e-44 184.1 107 86.0
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 1.7e-43 180.6 108 85.2
Sp6g08150 Schrenkiella parvula HOM05D000008 ORTHO05D000005 2.4e-42 176.8 130 72.3
BraA03t12056Z Brassica rapa HOM05D000008 ORTHO05D000005 1.7e-40 170.6 138 67.4
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 1.7e-35 154.1 112 75.0
BcaB01g02791 Brassica carinata HOM05D000008 ORTHO05D000005 1.7e-35 154.1 138 63.8
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 6.4e-35 152.1 114 71.1
C03p34520 Brassica napus HOM05D000008 ORTHO05D000005 8.4e-35 151.8 138 63.0
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 1.4e-34 151.0 111 74.8
Thhalv10028861m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 1.9e-34 150.6 141 63.1
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 4.2e-34 149.4 108 75.0
BcaC01g04720 Brassica carinata HOM05D000008 ORTHO05D000005 9.3e-34 148.3 138 60.9
BolC3t15762H Brassica oleracea HOM05D000008 ORTHO05D000005 9.3e-34 148.3 138 60.9
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 1.1e-31 141.4 92 76.1
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 5.6e-31 139.0 90 78.9
AT4G09460 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 7.3e-31 138.7 133 59.4
Carub.0006s2787 Capsella rubella HOM05D000008 ORTHO05D000005 1.3e-30 137.9 131 60.3
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 1.3e-30 137.9 84 79.8
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 1.6e-30 137.5 82 81.7
AL6G43010 Arabidopsis lyrata HOM05D000008 ORTHO05D000005 2.1e-30 137.1 132 59.8
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 2.8e-30 136.7 83 81.9
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 3.6e-30 136.3 85 78.8
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 4.8e-30 136.0 114 65.8
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 4.8e-30 136.0 114 65.8
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 4.8e-30 136.0 97 69.1
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 4.8e-30 136.0 97 69.1
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 4.8e-30 136.0 94 70.2
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 8.1e-30 135.2 82 80.5
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 8.1e-30 135.2 82 76.8
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 8.1e-30 135.2 99 68.7
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 1.1e-29 134.8 78 83.3
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 1.8e-29 134.0 121 61.2
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 1.8e-29 134.0 115 61.7
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 1.8e-29 134.0 80 80.0
CARHR260370 Cardamine hirsuta HOM05D000008 ORTHO05D000005 2.4e-29 133.7 132 60.6
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 3.1e-29 133.3 80 82.5
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 3.1e-29 133.3 80 82.5
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 3.1e-29 133.3 116 63.8
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 3.1e-29 133.3 80 81.2
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 5.3e-29 132.5 91 72.5
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 5.3e-29 132.5 92 72.8
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 6.9e-29 132.1 100 67.0
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 9.0e-29 131.7 86 77.9
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 9.0e-29 131.7 109 63.3
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 9.0e-29 131.7 83 80.7
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 9.0e-29 131.7 112 64.3
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 9.0e-29 131.7 80 78.8
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 1.2e-28 131.3 97 68.0
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 1.2e-28 131.3 110 61.8
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 1.5e-28 131.0 79 82.3
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 1.5e-28 131.0 76 82.9
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 2.0e-28 130.6 70 85.7
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 2.0e-28 130.6 78 79.5
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.6e-28 130.2 69 89.9
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 2.6e-28 130.2 83 74.7
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 3.4e-28 129.8 69 88.4
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 3.4e-28 129.8 76 77.6
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 3.4e-28 129.8 78 80.8
Aa31LG9G14820 Aethionema arabicum HOM05D000008 ORTHO05D000005 4.4e-28 129.4 142 59.2
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 4.4e-28 129.4 90 68.9
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 5.8e-28 129.0 97 68.0
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 7.6e-28 128.6 80 76.2
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 7.6e-28 128.6 76 77.6
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 7.6e-28 128.6 76 77.6
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 7.6e-28 128.6 82 78.0
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 1.3e-27 127.9 113 63.7
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 1.3e-27 127.9 113 63.7
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 1.3e-27 127.9 69 88.4
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 1.7e-27 127.5 111 55.9
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 1.7e-27 127.5 119 59.7
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 2.9e-27 126.7 81 75.3
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 2.9e-27 126.7 69 85.5
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 2.9e-27 126.7 82 75.6
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 2.9e-27 126.7 78 76.9
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 2.9e-27 126.7 69 87.0
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 3.8e-27 126.3 92 65.2
A03p28540 Brassica napus HOM05D000008 ORTHO05D000005 4.9e-27 125.9 138 55.1
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 6.4e-27 125.6 78 78.2
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 8.4e-27 125.2 77 75.3
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 8.4e-27 125.2 115 61.7
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 1.4e-26 124.4 80 75.0
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 1.4e-26 124.4 85 71.8
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 1.9e-26 124.0 84 72.6
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 4.2e-26 122.9 80 75.0
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 4.2e-26 122.9 84 71.4
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 5.4e-26 122.5 89 68.5
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 5.4e-26 122.5 70 80.0
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 7.1e-26 122.1 80 77.5
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 7.1e-26 122.1 87 70.1
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 9.3e-26 121.7 70 80.0
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 4.6e-25 119.4 76 72.4
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 3.0e-24 116.7 102 57.8
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 3.9e-24 116.3 92 63.0
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 8.7e-24 115.2 72 70.8
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 8.7e-24 115.2 82 73.2
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 1.9e-23 114.0 72 72.2
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 2.5e-23 113.6 73 78.1
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 4.3e-23 112.8 80 70.0
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 5.6e-23 112.5 82 65.9
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 7.3e-23 112.1 80 66.2
THA.LOC104806790 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 9.6e-23 111.7 138 51.4
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 3.6e-22 109.8 89 62.9
THA.LOC104816429 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 1.4e-21 107.8 125 49.6
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 2.4e-21 107.1 77 67.5
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 9.0e-21 105.1 69 68.1
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 2.0e-20 104.0 81 65.4
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 7.6e-20 102.1 81 59.3
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 4.9e-19 99.4 69 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1537 Anthoceros agrestis HOM05D007294 ORTHO05D009205 5.4e-18 95.9 69 65.2
THA.LOC104813106 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 2.3e-16 90.5 94 58.5
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 3.3e-15 86.7 88 58.0
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 4.3e-15 86.3 122 45.9
Mapoly0007s0151 Marchantia polymorpha HOM05D007294 ORTHO05D009205 7.4e-15 85.5 69 58.0
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 1.0e-11 75.1 42 78.6
MCO13G582 Micromonas commoda HOM05D007294 ORTHO05D009205 5.5e-10 69.3 94 39.4
Peaxi162Scf00395g00315 Petunia axillaris HOM05D007294 ORTHO05D009205 3.9e-08 63.2 90 41.1
CARHR259360 Cardamine hirsuta HOM05D007294 ORTHO05D009205 5.1e-08 62.8 30 93.3
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 1.1e-07 61.6 62 56.5
BcaB01g01652 Brassica carinata HOM05D000008 ORTHO05D009205 4.3e-07 59.7 47 66.0
AT1G35515 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 7.4e-07 58.9 95 43.2
Carub.0001s3314 Capsella rubella HOM05D000008 ORTHO05D000005 1.3e-06 58.2 93 43.0


User provided reference genes

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