Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23933 Brassica carinata HOM05D000074 ORTHO05D012273 3.5e-74 281.6 145 100.0
A05p17270 Brassica napus HOM05D000074 ORTHO05D001262 8.4e-28 127.5 127 63.8
BcaC08g44221 Brassica carinata HOM05D000074 ORTHO05D001262 2.4e-27 125.9 127 63.0
BcaNung06876 Brassica carinata HOM05D000074 ORTHO05D001262 3.2e-27 125.6 130 61.5
BraA05t20626Z Brassica rapa HOM05D000074 ORTHO05D001262 4.2e-27 125.2 127 63.0
C06p16260 Brassica napus HOM05D000074 ORTHO05D001262 7.1e-27 124.4 127 62.2
BolC6t36825H Brassica oleracea HOM05D000074 ORTHO05D001262 3.0e-25 119.0 128 60.2
BcaB02g10796 Brassica carinata HOM05D000074 ORTHO05D001262 3.3e-24 115.5 127 59.1
C06p16250 Brassica napus HOM05D000074 ORTHO05D001262 2.1e-23 112.8 130 59.2
BolC6t36824H Brassica oleracea HOM05D000074 ORTHO05D001262 2.1e-23 112.8 130 59.2
BraA08t32083Z Brassica rapa HOM05D000074 ORTHO05D001262 3.7e-23 112.1 130 57.7
Sp1g41450 Schrenkiella parvula HOM05D000074 ORTHO05D001262 6.2e-23 111.3 128 56.2
C03p93260 Brassica napus HOM05D000074 ORTHO05D001262 1.1e-22 110.5 130 55.4
BolC3t21624H Brassica oleracea HOM05D000074 ORTHO05D001262 1.1e-22 110.5 130 55.4
Sp1g41440 Schrenkiella parvula HOM05D000074 ORTHO05D001262 1.8e-22 109.8 127 55.9
BraA05t20627Z Brassica rapa HOM05D000074 ORTHO05D012273 3.4e-21 105.5 130 57.7
Thhalv10011262m.g Eutrema salsugineum HOM05D000074 ORTHO05D001262 5.8e-21 104.8 127 55.1
AT1G55850 Arabidopsis thaliana HOM05D000074 ORTHO05D001262 1.0e-20 104.0 127 54.3
Carub.0001s4442 Capsella rubella HOM05D000074 ORTHO05D001262 1.0e-20 104.0 141 52.5
Thhalv10011418m.g Eutrema salsugineum HOM05D000074 ORTHO05D001262 4.9e-20 101.7 127 53.5
AL1G63970 Arabidopsis lyrata HOM05D000074 ORTHO05D001262 1.1e-19 100.5 127 52.8
CARHR045550 Cardamine hirsuta HOM05D000074 ORTHO05D001262 3.5e-18 95.5 142 48.6
Aa31LG10G340 Aethionema arabicum HOM05D000074 ORTHO05D001262 4.8e-15 85.1 145 44.8
C06p10760 Brassica napus HOM05D000074 ORTHO05D012273 4.1e-14 82.0 127 48.8
C03p93280 Brassica napus HOM05D000074 ORTHO05D012273 1.0e-12 77.4 81 60.5
BolC3t21626H Brassica oleracea HOM05D000074 ORTHO05D012273 1.0e-12 77.4 81 60.5
BraSC56t46401Z Brassica rapa HOM05D000074 ORTHO05D012273 1.3e-12 77.0 124 47.6
THA.LOC104822730 Tarenaya hassleriana HOM05D000074 ORTHO05D001262 2.2e-12 76.3 139 41.0
BcaNung06877 Brassica carinata HOM05D000074 ORTHO05D012273 2.5e-11 72.8 95 51.6
Sed0016012 Sechium edule HOM05D000074 ORTHO05D001262 9.4e-11 70.9 128 39.1
ClCG09G021420 Citrullus lanatus HOM05D000074 ORTHO05D001262 2.7e-10 69.3 128 36.7
Manes.03G142500 Manihot esculenta HOM05D000074 ORTHO05D001262 3.6e-10 68.9 126 37.3
Sed0028035 Sechium edule HOM05D000074 ORTHO05D001262 4.6e-10 68.6 128 37.5
Sed0015429 Sechium edule HOM05D000074 ORTHO05D001262 7.9e-10 67.8 128 37.5
Sed0020776 Sechium edule HOM05D000074 ORTHO05D001262 7.9e-10 67.8 128 37.5
Sed0025884 Sechium edule HOM05D000074 ORTHO05D001262 1.4e-09 67.0 128 36.7
Ciclev10007571m.g Citrus clementina HOM05D000074 ORTHO05D001262 1.8e-09 66.6 127 33.9
MELO3C024950.2 Cucumis melo HOM05D000074 ORTHO05D001262 3.9e-09 65.5 126 34.9
CsaV3_7G021570 Cucumis sativus L. HOM05D000074 ORTHO05D001262 6.7e-09 64.7 126 34.9
CsaV3_7G011470 Cucumis sativus L. HOM05D000074 ORTHO05D001262 8.8e-09 64.3 128 33.6
Hma1.2p1_1516F.1_g288310 Hydrangea macrophylla HOM05D000074 ORTHO05D001262 1.5e-08 63.5 124 34.7
Ciclev10007585m.g Citrus clementina HOM05D000074 ORTHO05D001262 3.3e-08 62.4 127 35.4
MELO3C013191.2 Cucumis melo HOM05D000074 ORTHO05D001262 3.3e-08 62.4 126 34.9
FAN11G3327 Fragaria x ananassa HOM05D000074 ORTHO05D001262 5.7e-08 61.6 125 36.8
CANSAT11G0093 Cannabis sativa HOM05D000074 ORTHO05D001262 7.4e-08 61.2 125 34.4
Dinv40869 Davidia involucrata HOM05D000074 ORTHO05D001262 7.4e-08 61.2 126 34.9
Thecc.07G011400 Theobroma cacao HOM05D000074 ORTHO05D001262 7.4e-08 61.2 132 37.9
FAN21G1224 Fragaria x ananassa HOM05D000074 ORTHO05D001262 9.7e-08 60.8 125 37.6
Prupe.6G024800 Prunus persica HOM05D000074 ORTHO05D001262 9.7e-08 60.8 126 35.7
RcHm_v2.0_Chr5g0076831 Rosa chinensis HOM05D000074 ORTHO05D001262 9.7e-08 60.8 125 36.8
FAN25G0519 Fragaria x ananassa HOM05D000074 ORTHO05D001262 1.7e-07 60.1 125 37.6
TWI38G0865 Tripterygium wilfordii HOM05D000074 ORTHO05D001262 2.2e-07 59.7 128 37.5
Hma1.2p1_1094F.1_g256450 Hydrangea macrophylla HOM05D000074 ORTHO05D001262 2.8e-07 59.3 116 35.3
Potri.006G004300 Populus trichocarpa HOM05D000074 ORTHO05D001262 2.8e-07 59.3 138 34.8
RcHm_v2.0_Chr5g0076871 Rosa chinensis HOM05D000074 ORTHO05D001262 2.8e-07 59.3 126 35.7
MD03G1028800 Malus domestica HOM05D000074 ORTHO05D001262 3.7e-07 58.9 124 37.1
Phvul.006G058700 Phaseolus vulgaris HOM05D000074 ORTHO05D001262 6.3e-07 58.2 99 39.4
RcHm_v2.0_Chr5g0076901 Rosa chinensis HOM05D000074 ORTHO05D012273 6.3e-07 58.2 122 36.9
Thecc.07G011200 Theobroma cacao HOM05D000074 ORTHO05D001262 6.3e-07 58.2 121 33.9
Migut.H01751 Erythranthe guttata HOM05D000074 ORTHO05D001262 8.2e-07 57.8 128 36.7
Gorai.002G101400 Gossypium raimondii HOM05D000074 ORTHO05D001262 8.2e-07 57.8 127 34.6
Prupe.6G025000 Prunus persica HOM05D000074 ORTHO05D001262 8.2e-07 57.8 125 36.0
RcHm_v2.0_Chr5g0076891 Rosa chinensis HOM05D000074 ORTHO05D001262 8.2e-07 57.8 126 35.7
FAN21G1448 Fragaria x ananassa HOM05D000074 ORTHO05D001262 1.4e-06 57.0 126 34.9
Glyma.08G330600 Glycine max HOM05D000074 ORTHO05D001262 1.4e-06 57.0 119 38.7
Gohir.D01G076900 Gossypium hirsutum HOM05D000074 ORTHO05D001262 1.4e-06 57.0 127 34.6
MD03G1029000 Malus domestica HOM05D000074 ORTHO05D001262 1.4e-06 57.0 125 31.2
Eucgr.H05074 Eucalyptus grandis HOM05D000074 ORTHO05D001262 1.8e-06 56.6 124 35.5
Lj6g0027288 Lotus japonicus HOM05D000074 ORTHO05D001262 1.8e-06 56.6 111 38.7
MBI14_g06715_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001262 1.8e-06 56.6 95 36.8
Medtr3g060280 Medicago truncatula HOM05D000074 ORTHO05D001262 2.4e-06 56.2 96 43.8
Oeu051718.1 Olea europaea HOM05D000074 ORTHO05D001262 2.4e-06 56.2 126 32.5
Ciclev10010783m.g Citrus clementina HOM05D000074 ORTHO05D001262 3.1e-06 55.8 116 35.3
Medtr3g060220 Medicago truncatula HOM05D000074 ORTHO05D001262 3.1e-06 55.8 121 33.1
RcHm_v2.0_Chr5g0076921 Rosa chinensis HOM05D000074 ORTHO05D001262 3.1e-06 55.8 124 36.3
vmacro09636 Vaccinium macrocarpon HOM05D000074 ORTHO05D001262 3.1e-06 55.8 120 31.7
arahy.Tifrunner.gnm1.ann1.XE16ZF Arachis hypogaea HOM05D000074 ORTHO05D001262 4.1e-06 55.5 130 33.1
Dinv10346 Davidia involucrata HOM05D000074 ORTHO05D001262 4.1e-06 55.5 124 34.7
Sabra06G0003600 Salix brachista HOM05D000074 ORTHO05D001262 4.1e-06 55.5 135 33.3
Actinidia37144 Actinidia chinensis HOM05D000074 ORTHO05D001262 5.3e-06 55.1 125 32.0
FAN11G3234 Fragaria x ananassa HOM05D000074 ORTHO05D001262 5.3e-06 55.1 132 33.3
MBI14_g24031_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001262 5.3e-06 55.1 96 37.5
Sabra16G0242000 Salix brachista HOM05D000074 ORTHO05D001262 5.3e-06 55.1 127 32.3
MBI14_g24030_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D001262 6.9e-06 54.7 96 37.5
Nn5g27070 Nelumbo nucifera HOM05D000074 ORTHO05D001262 6.9e-06 54.7 99 36.4
Psat5g166680 Pisum sativum HOM05D000074 ORTHO05D001262 6.9e-06 54.7 126 33.3
FvH4_3g42800 Fragaria vesca HOM05D000074 ORTHO05D001262 9.1e-06 54.3 133 32.3
RcHm_v2.0_Chr5g0076851 Rosa chinensis HOM05D000074 ORTHO05D001262 9.1e-06 54.3 132 33.3


User provided reference genes

Program Settings