Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 8.1e-95 350.5 192 100.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.1e-49 198.4 174 66.7
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-48 196.8 157 66.9
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-48 196.8 157 66.9
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 9.7e-48 194.1 157 66.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-46 190.7 179 60.9
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-45 187.2 153 66.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.0e-45 186.4 157 63.7
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.0e-45 186.4 153 65.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 2.6e-45 186.0 157 63.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-45 186.0 157 63.1
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 9.4e-43 177.6 129 71.3
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-42 177.2 153 62.7
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 5.2e-41 171.8 142 66.2
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-40 170.2 142 64.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.4e-38 162.9 158 61.4
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.1e-38 162.5 157 60.5
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.6e-37 160.2 158 59.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.9e-37 158.3 198 55.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-36 157.1 224 46.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 8.0e-34 147.9 158 54.4
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.4e-24 115.5 123 49.6
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 9.1e-22 107.8 83 66.3
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-21 107.5 114 50.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-21 107.1 129 48.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-21 106.7 160 40.6
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.5e-21 105.5 122 48.4
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.0e-20 102.1 129 45.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.5e-19 100.5 124 45.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-18 97.4 127 42.5
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-17 94.4 127 41.7
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-17 94.4 127 41.7
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.3e-17 93.2 129 43.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.2e-17 92.0 135 44.4
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-16 90.9 127 40.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.0e-16 90.1 183 36.1
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 2.6e-16 89.7 127 39.4
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.6e-16 89.7 138 39.9
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 9.8e-16 87.8 122 41.8
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-15 87.4 122 42.6
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-15 85.9 127 38.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 3.7e-15 85.9 122 41.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-14 83.6 117 42.7
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 7.0e-14 81.6 111 45.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-13 80.9 118 40.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 6.6e-12 75.1 120 39.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 9.5e-11 71.2 123 35.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.6e-10 70.5 121 38.0
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.6e-10 69.3 122 35.2
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.3e-09 66.6 123 34.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.0e-09 65.9 123 35.0
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 4.0e-09 65.9 124 36.3
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 5.2e-09 65.5 123 33.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 5.2e-09 65.5 123 31.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 5.2e-09 65.5 123 33.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.8e-09 65.1 123 32.5
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 8.9e-09 64.7 122 33.6
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.2e-08 64.3 129 32.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.0e-08 63.5 123 33.3
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.0e-08 63.5 123 31.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.6e-08 63.2 128 32.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-08 63.2 128 32.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-08 63.2 128 32.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.6e-08 63.2 123 33.3
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.4e-08 62.8 180 26.7
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 3.4e-08 62.8 129 32.6
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 3.4e-08 62.8 123 30.1
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.4e-08 62.8 123 33.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 4.4e-08 62.4 129 31.8
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 5.8e-08 62.0 127 31.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 5.8e-08 62.0 181 28.7
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 7.5e-08 61.6 120 32.5
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 7.5e-08 61.6 128 32.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 9.8e-08 61.2 123 32.5
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.3e-07 60.8 128 31.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.3e-07 60.8 123 31.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.3e-07 60.8 115 33.9
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.7e-07 60.5 124 33.1
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.7e-07 60.5 124 31.5
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.2e-07 60.1 123 30.9
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.2e-07 60.1 125 28.8
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.2e-07 60.1 125 31.2
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.2e-07 60.1 123 31.7
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.9e-07 59.7 123 31.7
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 4.9e-07 58.9 125 30.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 4.9e-07 58.9 123 30.1
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-06 57.8 154 28.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-06 57.8 123 31.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.4e-06 57.4 84 41.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-06 57.0 72 40.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.9e-06 57.0 134 32.1
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.9e-06 57.0 87 40.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.4e-06 56.6 124 29.8
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.2e-06 56.2 73 41.1
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.1e-06 55.8 123 30.9
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 9.2e-06 54.7 121 29.8


User provided reference genes

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