Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 2.9e-35 151.4 76 100.0
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-32 142.9 76 93.4
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-32 142.9 76 93.4
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-32 142.9 76 93.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 3.0e-32 141.4 76 93.4
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.0e-32 141.4 76 93.4
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.0e-32 141.4 76 93.4
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 92.1
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 92.1
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 92.1
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 90.8
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 90.8
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-30 135.2 76 89.5
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 2.1e-30 135.2 76 89.5
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 2.1e-30 135.2 76 89.5
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.1e-30 135.2 76 89.5
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 8.0e-30 133.3 76 88.2
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-29 132.5 76 86.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.4e-29 132.5 76 86.8
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.8e-29 132.1 76 88.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 2.3e-29 131.7 76 86.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.4e-28 127.9 76 86.8
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 4.4e-28 127.5 76 84.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.4e-18 95.1 76 65.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.3e-16 88.6 74 66.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.3e-15 84.7 76 60.5
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.3e-15 84.7 76 57.9
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.1e-14 82.0 89 55.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.8e-14 81.6 74 62.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 4.7e-14 80.9 74 62.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.2e-14 80.5 87 54.0
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 8.1e-14 80.1 76 57.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-13 79.7 70 58.6
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.1e-13 79.7 76 53.9
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 5.2e-13 77.4 76 53.9
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 8.9e-13 76.6 76 56.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.2e-12 76.3 62 62.9
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.5e-12 75.9 68 61.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 4.4e-12 74.3 69 58.0
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 5.8e-12 73.9 76 56.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 5.8e-12 73.9 61 62.3
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.6e-12 73.6 66 60.6
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.9e-12 73.2 69 55.1
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.7e-11 72.4 71 50.7
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.2e-11 72.0 75 52.0
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.9e-11 71.6 68 57.4
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.8e-11 71.2 68 52.9
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.8e-11 71.2 76 55.3
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.9e-11 70.9 77 54.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.4e-11 70.5 83 54.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 8.4e-11 70.1 70 52.9
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.4e-11 70.1 70 52.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.1e-10 69.7 68 55.9
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-10 69.3 73 54.8
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.9e-10 68.9 69 50.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-10 68.6 69 56.5
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.4e-10 68.6 64 59.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.4e-10 68.6 76 52.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.4e-10 68.6 81 51.9
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 4.1e-10 67.8 70 55.7
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 4.1e-10 67.8 70 55.7
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 4.1e-10 67.8 68 54.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.1e-10 67.8 87 47.1
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.1e-10 67.8 87 47.1
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.1e-10 67.8 87 47.1
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 4.1e-10 67.8 65 53.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.4e-10 67.4 70 57.1
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 7.1e-10 67.0 63 57.1
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 7.1e-10 67.0 70 52.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 9.2e-10 66.6 66 54.5
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 9.2e-10 66.6 66 54.5
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.2e-10 66.6 75 49.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.6e-09 65.9 54 57.4
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.5e-09 64.7 71 54.9
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 3.5e-09 64.7 74 51.4
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.6e-09 64.3 64 57.8
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 6.0e-09 63.9 64 56.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 7.8e-09 63.5 69 47.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.0e-08 63.2 74 51.4
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.3e-08 62.8 61 55.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.3e-08 62.8 63 55.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-08 62.4 64 56.2
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.3e-08 62.0 61 55.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.9e-08 61.2 61 49.2
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 6.6e-08 60.5 60 53.3
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 6.6e-08 60.5 56 53.6
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.7e-08 60.1 63 54.0
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.9e-07 58.9 61 50.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.9e-07 58.9 54 55.6
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-07 58.9 68 45.6
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-07 58.9 68 45.6
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.3e-07 58.2 63 50.8
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.3e-07 58.2 63 49.2
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 3.3e-07 58.2 63 54.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.3e-07 58.2 62 51.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 61 54.1
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.3e-07 57.8 63 50.8
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 62 56.5
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.3e-07 57.8 62 50.0
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 5.6e-07 57.4 61 49.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 5.6e-07 57.4 61 49.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 5.6e-07 57.4 73 46.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 5.6e-07 57.4 63 55.6
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 47.5
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 9.6e-07 56.6 52 55.8
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 9.6e-07 56.6 63 47.6
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.2e-06 56.2 63 52.4
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-06 56.2 75 46.7
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-06 56.2 75 46.7
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.2e-06 56.2 63 50.8
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.2e-06 56.2 63 52.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.6e-06 55.8 61 54.1
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.6e-06 55.8 66 51.5
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.1e-06 55.5 62 51.6
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 2.8e-06 55.1 62 48.4
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.8e-06 55.1 50 56.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.8e-06 55.1 63 52.4
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 3.6e-06 54.7 64 48.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.6e-06 54.7 63 49.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.6e-06 54.7 63 49.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.6e-06 54.7 63 49.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.6e-06 54.7 62 54.8
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 3.6e-06 54.7 62 54.8
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.6e-06 54.7 79 43.0
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.6e-06 54.7 63 49.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 3.6e-06 54.7 77 46.8
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 4.7e-06 54.3 70 47.1
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 6.2e-06 53.9 67 49.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 50.8
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.1e-06 53.5 64 50.0
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 8.1e-06 53.5 66 48.5
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 50.8


User provided reference genes

Program Settings