Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 7.8e-251 870.2 495 100.0
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-199 699.5 495 84.0
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 5.5e-196 688.0 503 82.3
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 1.5e-188 663.3 496 81.5
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 1.5e-188 663.3 496 81.5
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 4.1e-175 618.6 506 76.1
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 4.3e-172 608.6 496 73.8
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 1.4e-170 603.6 496 75.4
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.9e-168 595.9 498 73.5
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.2e-166 590.5 525 73.3
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 2.0e-166 589.7 496 74.4
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 2.8e-163 579.3 512 72.1
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 2.6e-161 572.8 495 69.7
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 3.5e-158 562.4 499 73.1
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 1.3e-152 543.9 499 73.7
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 3.3e-148 529.3 500 72.2
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.5e-140 503.8 516 67.4
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.9e-124 450.3 502 58.0
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 7.2e-95 352.1 499 50.5
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.0e-93 348.2 503 47.9
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 3.6e-86 323.2 517 48.7
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 3.0e-85 320.1 507 45.6
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.1e-84 318.2 500 46.6
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 4.8e-83 312.8 515 44.7
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 5.9e-81 305.8 498 44.6
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 1.9e-79 300.8 502 44.0
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 1.8e-77 294.3 488 43.6
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 4.1e-74 283.1 525 41.3
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 7.0e-74 282.3 497 42.5
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 8.6e-40 169.1 498 32.9
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 8.6e-40 169.1 498 32.7
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-39 168.7 530 32.6
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 4.3e-39 166.8 515 31.3
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.6e-38 163.7 526 33.8
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.1e-37 162.2 511 33.1
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.0e-37 160.2 498 31.7
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 5.2e-37 159.8 510 31.4
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 1.2e-36 158.7 505 31.7
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 1.5e-36 158.3 391 37.1
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 2.6e-36 157.5 164 54.3
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 5.8e-36 156.4 526 31.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.3e-35 155.2 494 31.8
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 1.3e-35 155.2 531 31.8
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 4.9e-35 153.3 485 30.7
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 4.9e-35 153.3 510 33.1
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 2.4e-34 151.0 524 30.0
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 5.4e-34 149.8 502 31.7
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.2e-33 148.7 506 32.2
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.0e-32 145.6 522 29.3
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.3e-32 145.2 521 32.2
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 5.1e-32 143.3 539 30.6
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 8.6e-32 142.5 532 31.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 3.3e-31 140.6 504 28.4
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 3.3e-31 140.6 558 29.0
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.6e-30 138.3 508 31.9
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 4.7e-30 136.7 500 28.2
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 1.1e-29 135.6 500 29.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.4e-29 135.2 500 28.4
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 1.2e-28 132.1 515 29.1
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.5e-28 131.7 543 30.9
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.6e-28 131.0 495 29.7
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.7e-27 128.3 516 29.5
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 6.4e-27 126.3 488 29.1
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 6.4e-27 126.3 532 30.8
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.4e-27 126.3 526 28.7
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.1e-26 125.6 496 27.6
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.4e-26 125.2 535 29.0
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.9e-26 124.8 544 29.8
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 4.2e-26 123.6 403 33.3
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 5.4e-26 123.2 509 27.1
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.2e-25 122.1 541 29.8
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 2.7e-25 120.9 529 28.5
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 4.6e-25 120.2 124 54.0
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 6.0e-25 119.8 517 27.9
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.0e-24 119.0 519 29.9
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.3e-24 118.6 521 28.8
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 1.3e-24 118.6 506 28.1
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 1.7e-24 118.2 521 28.2
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 5.1e-24 116.7 523 28.5
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.1e-23 115.5 500 28.2
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.5e-23 114.4 515 29.9
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.5e-23 114.4 400 30.2
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.3e-23 114.0 400 29.0
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 7.3e-23 112.8 511 29.2
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 9.6e-23 112.5 526 28.7
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 1.2e-22 112.1 512 32.4
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.2e-22 112.1 505 27.7
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.2e-22 112.1 505 27.7
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 1.6e-22 111.7 114 59.6
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.6e-22 111.7 511 26.4
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 2.1e-22 111.3 513 27.7
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.8e-22 110.9 520 28.7
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.6e-22 110.5 492 26.0
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.6e-22 110.5 492 26.0
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 3.6e-22 110.5 400 29.5
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 4.7e-22 110.2 520 25.8
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 8.1e-22 109.4 497 30.0
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.1e-21 109.0 501 29.5
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 5.3e-21 106.7 497 26.6
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.2e-20 105.5 350 28.6
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.5e-20 105.1 511 25.2
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 2.0e-20 104.8 462 27.3
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 3.4e-20 104.0 513 31.8
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 4.4e-20 103.6 517 26.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.2e-19 101.3 208 34.6
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 6.4e-19 99.8 502 25.9
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.4e-18 98.6 502 26.9
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 7.1e-18 96.3 177 39.0
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 9.3e-18 95.9 427 26.0
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.0e-16 92.4 538 27.1
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 1.0e-16 92.4 504 28.2
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.3e-16 92.0 133 47.4
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.7e-16 91.7 521 26.5
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 3.0e-16 90.9 467 30.2
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 9.6e-15 85.9 506 27.1
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.8e-14 84.3 500 26.6
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.8e-14 84.3 534 27.5
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 3.6e-14 84.0 168 39.3
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 6.2e-14 83.2 506 24.1
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.4e-13 82.0 506 26.3
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.4e-13 82.0 437 25.4
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.8e-13 81.6 400 25.2
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.3e-13 80.1 510 24.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 2.6e-12 77.8 531 25.2
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 5.8e-12 76.6 508 25.0
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.7e-11 75.1 521 24.2
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.9e-11 73.6 496 25.4
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 4.9e-11 73.6 456 26.5
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 6.4e-11 73.2 492 23.8
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 8.4e-11 72.8 512 24.8
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 1.9e-10 71.6 495 22.8
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 9.3e-10 69.3 509 25.0
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.1e-09 68.2 498 24.5
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 2.7e-09 67.8 187 34.2
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 6.0e-09 66.6 465 26.9
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 7.9e-09 66.2 503 24.7
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 1.3e-08 65.5 95 44.2
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.3e-08 65.5 509 24.8
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.3e-08 64.7 480 23.5
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.9e-08 63.9 496 23.8
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 8.7e-08 62.8 491 24.2
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.5e-07 62.0 490 23.9
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 2.5e-07 61.2 505 23.4
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 4.3e-07 60.5 506 25.5
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 5.6e-07 60.1 149 33.6
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 7.4e-07 59.7 494 22.9
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 7.4e-07 59.7 90 37.8
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 9.6e-07 59.3 481 23.9
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 9.6e-07 59.3 484 24.4
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.3e-06 58.9 491 23.2
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.3e-06 58.9 495 22.6
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.1e-06 58.2 505 22.0
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 6.2e-06 56.6 503 25.4
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 6.2e-06 56.6 493 24.5
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 8.1e-06 56.2 135 34.8
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 8.1e-06 56.2 495 22.8


User provided reference genes

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