Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-173 613.2 382 100.0
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.4e-146 522.7 392 78.8
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.4e-146 522.7 392 78.8
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 7.1e-143 511.1 395 79.0
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 1.3e-141 506.9 395 80.5
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.4e-138 496.9 421 74.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.6e-134 483.4 400 77.8
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.8e-133 479.9 421 74.6
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 6.5e-128 461.5 431 76.1
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.6e-126 456.8 433 74.1
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 4.6e-126 455.3 402 75.6
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 4.3e-124 448.7 399 70.2
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 3.0e-117 426.0 401 70.8
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.3e-115 420.6 449 65.0
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.5e-111 406.4 334 74.3
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 2.0e-105 386.7 395 59.5
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.5e-105 385.6 418 68.9
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 7.7e-105 384.8 411 64.5
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 7.2e-103 378.3 391 63.7
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.5e-84 317.4 389 49.1
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 9.2e-82 308.1 449 55.2
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.3e-80 303.5 427 54.6
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.9e-80 303.1 411 45.5
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 5.0e-80 302.4 409 46.0
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 7.3e-79 298.5 409 46.7
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.6e-78 297.4 402 46.5
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.6e-78 296.2 407 44.7
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.6e-78 296.2 389 46.8
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 4.7e-78 295.8 408 45.8
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 8.0e-78 295.0 416 45.7
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 8.0e-78 295.0 413 48.4
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.4e-77 294.3 479 53.0
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 2.3e-77 293.5 407 52.1
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.0e-77 292.7 458 53.1
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 4.0e-77 292.7 461 52.9
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.2e-77 292.4 406 43.8
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 5.2e-77 292.4 391 46.8
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 5.2e-77 292.4 373 51.2
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 5.2e-77 292.4 447 50.1
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 6.8e-77 292.0 413 57.6
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 8.9e-77 291.6 379 46.7
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.9e-77 291.6 400 46.2
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 8.9e-77 291.6 419 44.4
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 5.8e-76 288.9 415 43.4
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.3e-75 287.7 368 48.4
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.7e-75 287.3 422 43.4
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.9e-75 286.6 409 43.3
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 4.9e-75 285.8 418 44.3
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 8.3e-75 285.0 380 46.8
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.9e-74 283.9 467 51.8
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.4e-74 282.3 373 47.2
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.2e-74 281.6 439 53.8
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.6e-73 280.8 448 53.1
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 2.0e-73 280.4 375 46.4
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.7e-73 280.0 448 53.1
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.5e-73 279.6 401 43.6
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 6.0e-73 278.9 381 45.9
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 7.8e-73 278.5 415 49.2
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.0e-72 278.1 475 50.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.3e-72 277.7 398 43.5
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.3e-72 277.7 412 44.4
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.3e-72 277.7 440 55.0
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-72 277.7 417 42.2
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.0e-72 275.8 408 42.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.9e-71 273.9 436 51.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.5e-71 273.5 412 43.2
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 5.6e-71 272.3 436 53.2
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 7.3e-71 271.9 466 51.3
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.6e-70 270.8 432 53.7
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 5.2e-69 265.8 418 46.2
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.2e-68 264.6 494 42.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 4.4e-68 262.7 362 51.4
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 5.8e-68 262.3 448 40.2
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.8e-68 262.3 395 54.7
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 5.8e-68 262.3 496 46.0
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 7.5e-68 261.9 413 40.9
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.2e-67 260.4 479 47.6
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.9e-67 260.0 411 40.9
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.7e-67 259.6 491 46.6
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 8.3e-67 258.5 510 48.0
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-66 257.7 425 52.7
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 2.4e-66 256.9 488 47.1
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.4e-66 256.9 475 49.5
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.1e-66 256.1 439 52.6
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.4e-66 255.8 497 46.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.6e-65 254.2 352 43.8
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 2.1e-65 253.8 387 43.2
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.1e-65 253.8 488 46.9
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 6.0e-65 252.3 492 47.8
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.0e-64 251.5 529 45.9
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.9e-64 249.6 449 51.2
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.3e-63 246.5 475 48.2
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 9.5e-63 245.0 413 39.2
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 4.7e-62 242.7 404 39.9
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 8.1e-62 241.9 423 38.8
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.8e-61 240.7 387 54.3
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 5.2e-61 239.2 343 44.6
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 1.5e-60 237.7 451 49.7
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 3.4e-60 236.5 387 39.8
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 7.6e-60 235.3 332 45.5
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.9e-60 235.0 467 48.6
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.7e-59 234.2 359 42.6
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 2.2e-59 233.8 509 42.2
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 3.2e-58 229.9 446 41.5
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.4e-58 229.2 486 46.7
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 7.8e-57 225.3 570 39.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.3e-56 223.8 384 41.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 3.0e-56 223.4 335 41.2
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.5e-55 221.1 492 47.2
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.9e-55 220.7 356 40.4
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.9e-55 220.7 489 35.0
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.3e-55 219.9 477 40.7
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 4.4e-52 209.5 156 70.5
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.8e-52 209.1 502 43.6
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.8e-52 209.1 502 43.6
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.3e-51 208.0 575 39.3
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.8e-51 206.5 175 64.0
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.4e-50 204.5 138 73.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 2.7e-49 200.3 341 45.7
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 1.7e-48 197.6 107 94.4
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.2e-42 176.4 149 64.4
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.9e-39 167.5 133 65.4
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 9.3e-34 148.7 443 39.3
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 4.3e-31 139.8 161 47.8
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 3.4e-28 130.2 179 42.5
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.3e-27 128.3 302 35.1
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 9.3e-26 122.1 366 31.7
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 7.4e-23 112.5 138 46.4
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 6.1e-17 92.8 61 70.5
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.3e-15 87.0 55 65.5
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.2e-14 84.3 67 50.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.0e-11 75.5 75 48.0
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 6.5e-11 72.8 80 48.8


User provided reference genes

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