Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 9.1e-67 256.9 143 100.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 6.1e-55 217.6 142 85.9
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-50 202.6 147 83.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 8.6e-41 170.6 138 75.4
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 8.6e-41 170.6 138 75.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-34 149.8 142 67.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.8e-33 145.2 152 60.5
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 6.6e-33 144.4 140 65.7
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.1e-32 143.7 142 64.1
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 1.9e-32 142.9 119 73.1
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 1.9e-32 142.9 119 73.1
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.3e-32 142.1 141 64.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.3e-32 141.7 88 87.5
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 1.2e-31 140.2 119 67.2
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.8e-31 139.0 136 66.9
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 3.0e-30 135.6 111 68.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-29 133.7 87 82.8
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.5e-29 133.3 121 71.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.4e-29 131.7 139 58.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-29 131.3 116 70.7
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 6.4e-28 127.9 116 69.8
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-27 125.9 116 69.0
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.2e-27 125.6 140 58.6
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.1e-27 125.2 140 60.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 9.2e-27 124.0 125 60.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.5e-26 122.1 127 60.6
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 7.8e-26 120.9 116 66.4
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 7.8e-26 120.9 116 66.4
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 7.8e-26 120.9 116 66.4
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 3.3e-24 115.5 93 68.8
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 5.6e-24 114.8 117 61.5
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.6e-23 112.1 117 60.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.4e-20 101.3 134 55.2
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 4.1e-19 98.6 138 47.8
BraA05t21193Z Brassica rapa HOM05D003513 ORTHO05D004660 3.0e-17 92.4 77 70.1
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 8.6e-17 90.9 144 48.6
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-16 89.4 101 59.4
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.2e-15 87.0 144 44.4
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-14 83.6 145 43.4
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.4e-14 83.6 145 43.4
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-13 80.1 143 42.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 4.4e-13 78.6 136 43.4
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.7e-12 76.6 136 39.0
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 3.7e-12 75.5 45 86.7
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.9e-12 75.1 126 43.7
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 8.3e-12 74.3 119 45.4
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 8.3e-12 74.3 140 41.4
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.1e-11 73.9 122 47.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.4e-11 73.6 140 42.9
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.2e-11 72.4 122 43.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 4.1e-11 72.0 142 40.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 4.1e-11 72.0 145 40.0
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 4.1e-11 72.0 118 47.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 5.4e-11 71.6 47 78.7
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 5.4e-11 71.6 122 42.6
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 7.1e-11 71.2 130 37.7
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 9.2e-11 70.9 125 44.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.2e-10 70.5 124 41.1
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.7e-10 69.3 122 44.3
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.5e-10 68.9 140 39.3
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.6e-10 68.6 117 41.9
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.3e-09 67.0 134 39.6
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.3e-09 67.0 142 39.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.7e-09 66.6 113 43.4
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.7e-09 66.6 125 39.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.7e-09 66.6 124 41.1
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.7e-09 66.6 136 39.7
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.3e-09 66.2 122 40.2
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 2.3e-09 66.2 122 40.2
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.3e-09 66.2 121 40.5
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.0e-09 65.9 134 39.6
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.9e-09 65.5 140 40.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.9e-09 65.5 128 39.8
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.9e-09 65.5 134 38.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 6.6e-09 64.7 145 37.9
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 6.6e-09 64.7 139 38.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 6.6e-09 64.7 125 44.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 6.6e-09 64.7 129 39.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 6.6e-09 64.7 124 43.5
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 8.6e-09 64.3 124 41.1
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-08 63.9 32 96.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-08 63.9 110 42.7
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-08 63.9 134 41.0
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.1e-08 63.9 145 39.3
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.5e-08 63.5 134 38.8
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.5e-08 63.5 115 39.1
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.5e-08 63.5 144 36.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.5e-08 63.5 114 38.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.9e-08 63.2 119 40.3
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.9e-08 63.2 136 38.2
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-08 62.8 142 37.3
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.5e-08 62.8 121 40.5
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.3e-08 62.4 128 36.7
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 3.3e-08 62.4 137 38.7
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.3e-08 62.4 119 39.5
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.3e-08 62.4 123 40.7
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.3e-08 62.4 120 40.8
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 4.3e-08 62.0 174 32.2
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.3e-08 62.0 121 40.5
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.3e-08 62.0 114 39.5
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 5.6e-08 61.6 128 38.3
A05p38730 Brassica napus HOM05D000051 ORTHO05D033618 7.3e-08 61.2 40 75.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 7.3e-08 61.2 114 44.7
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.2e-07 60.5 118 43.2
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.2e-07 60.5 119 42.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-07 60.5 126 38.1
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.2e-07 60.5 119 39.5
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.6e-07 60.1 119 40.3
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.6e-07 60.1 146 36.3
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.6e-07 60.1 143 35.0
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.6e-07 60.1 122 40.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.6e-07 60.1 114 40.4
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-07 59.7 119 40.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.1e-07 59.7 120 39.2
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.1e-07 59.7 120 39.2
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 4.7e-07 58.5 111 37.8
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 4.7e-07 58.5 120 40.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 6.2e-07 58.2 117 44.4
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 8.1e-07 57.8 116 39.7
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.1e-06 57.4 116 36.2
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.1e-06 57.4 178 30.3
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.1e-06 57.4 113 38.1
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.8e-06 56.6 166 30.7
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.8e-06 56.6 146 35.6
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-06 56.6 58 56.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.8e-06 56.6 179 31.8
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.8e-06 56.6 133 33.8
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.4e-06 56.2 130 34.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.1e-06 55.8 122 37.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 3.1e-06 55.8 109 40.4
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.0e-06 55.5 179 31.8
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 4.0e-06 55.5 114 39.5
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 5.2e-06 55.1 165 31.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 5.2e-06 55.1 117 40.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 6.8e-06 54.7 158 32.3
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.8e-06 54.7 118 37.3
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 8.9e-06 54.3 110 37.3
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 8.9e-06 54.3 120 36.7


User provided reference genes

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