Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 0.0e+00 2810.8 1399 100.0
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 0.0e+00 1847.4 1448 67.9
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 0.0e+00 1189.5 1452 47.8
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 0.0e+00 1153.7 1452 46.3
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 0.0e+00 1151.7 1440 46.5
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 0.0e+00 1149.0 1449 46.4
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 0.0e+00 1148.3 1449 46.0
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 0.0e+00 1131.7 1470 45.4
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 0.0e+00 1126.3 1448 45.5
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 0.0e+00 1121.3 1455 44.9
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 0.0e+00 1119.8 1456 45.1
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 0.0e+00 1114.4 1447 44.9
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 0.0e+00 1113.6 1442 45.4
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1113.2 1454 45.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1113.2 1441 45.2
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 0.0e+00 1104.0 1444 44.5
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.8e-311 1072.0 1447 44.1
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 6.7e-311 1071.2 1448 44.2
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.5e-307 1060.1 1448 44.3
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.9e-242 843.2 1489 35.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 6.9e-236 822.0 1456 35.9
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 2.6e-235 820.1 1486 36.1
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.1e-233 814.7 1452 36.0
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 2.8e-229 800.0 935 51.7
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 4.5e-227 792.7 1488 34.5
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 5.9e-227 792.3 1482 35.6
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 3.6e-224 783.1 1565 33.8
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 1.0e-223 781.6 912 50.9
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.9e-223 779.6 1474 34.3
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 8.8e-223 778.5 917 50.5
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 4.4e-222 776.2 1463 34.2
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-222 775.8 914 50.1
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 4.5e-219 766.1 714 61.1
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-218 764.6 912 50.2
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 9.4e-217 758.4 1466 34.7
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.0e-215 755.0 1478 34.9
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 7.4e-214 748.8 1464 34.4
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 7.4e-214 748.8 1478 33.4
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.2e-208 731.5 1460 33.8
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.1e-208 730.7 1488 32.9
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 8.8e-207 725.3 1458 33.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 3.8e-202 709.9 1473 33.6
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.5e-201 708.0 1508 32.3
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.7e-200 703.7 1453 33.7
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.0e-199 701.8 1453 32.4
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 3.0e-199 700.3 1455 33.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.5e-198 698.0 1460 32.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 2.6e-198 697.2 1276 35.8
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 4.8e-197 693.0 1455 32.7
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.1e-193 681.8 1463 31.2
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 4.2e-193 679.9 1476 32.6
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 2.3e-191 674.1 1443 31.9
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.0e-191 673.3 1443 32.0
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 8.9e-191 672.2 1397 32.8
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.6e-190 670.6 1447 33.0
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 3.1e-188 663.7 1456 32.5
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.7e-187 660.6 1442 32.0
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-186 658.7 1445 32.1
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 6.6e-186 656.0 1418 32.2
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.5e-185 654.8 1276 33.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.9e-185 654.4 956 39.3
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 1.5e-182 644.8 1490 31.6
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 2.0e-182 644.4 1504 30.9
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.6e-182 644.0 1469 31.8
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 3.4e-182 643.7 1441 32.5
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.2e-181 641.0 1385 32.3
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 5.4e-180 636.3 1423 31.5
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 5.4e-180 636.3 1420 32.2
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 7.0e-180 636.0 1464 30.3
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 7.0e-180 636.0 1464 30.3
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 7.0e-180 636.0 1496 31.0
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 9.2e-180 635.6 1471 31.1
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-178 632.1 1450 31.2
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.3e-178 630.9 1207 35.3
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.1e-177 628.6 1407 32.3
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 7.3e-177 625.9 1517 30.7
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 7.3e-177 625.9 1455 30.4
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 5.8e-174 616.3 1544 29.9
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 1.1e-172 612.1 1459 31.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.0e-170 605.5 1452 30.7
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.3e-170 604.4 1476 31.4
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 3.9e-170 603.6 1417 30.7
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 6.6e-170 602.8 1421 30.6
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 2.5e-169 600.9 1410 31.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.7e-165 587.0 1417 31.1
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.4e-159 568.5 1443 29.7
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.0e-158 564.7 1250 31.9
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.6e-155 555.1 1466 29.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 5.1e-154 550.1 1468 28.7
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 6.6e-154 549.7 1471 28.3
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.1e-151 540.8 1467 29.4
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 3.2e-148 530.8 1477 29.2
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 8.7e-146 522.7 1445 29.8
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 3.3e-145 520.8 1484 29.6
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.3e-130 472.2 947 33.5
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 6.7e-130 469.9 515 53.2
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 9.6e-129 466.1 524 50.4
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 8.2e-128 463.0 1409 27.6
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.4e-127 462.2 1397 28.0
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 7.6e-126 456.4 846 35.7
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 7.1e-124 449.9 1445 27.1
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 9.0e-119 433.0 902 33.7
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 6.5e-117 426.8 1293 29.4
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 9.4e-116 422.9 1498 25.9
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.0e-114 419.5 1498 25.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 4.8e-104 384.0 1266 26.7
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 7.4e-97 360.1 902 30.8
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.3e-96 359.4 1435 25.4
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-84 319.3 863 28.6
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 4.2e-84 317.8 523 42.1
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.7e-75 287.7 626 33.9
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.6e-73 282.0 797 28.9
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.8e-71 275.8 730 28.1
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 8.9e-66 256.9 479 36.5
AT5G28550 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.5e-60 238.8 205 62.9
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 1.9e-55 222.6 466 32.8
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 3.2e-55 221.9 569 30.4
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 1.2e-54 219.9 1108 23.4
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 2.5e-52 212.2 1107 23.4
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 2.1e-51 209.1 675 27.4
Gohir.D01G167366 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.1e-47 194.9 511 29.4
Gohir.A01G176550 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.1e-46 192.6 507 29.0
CARHR222380 Cardamine hirsuta HOM05D002759 ORTHO05D003290 9.6e-44 183.7 176 52.8
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 3.6e-43 181.8 1070 22.3
CARHR230020 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.9e-40 172.2 297 37.7
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 9.3e-39 167.2 745 23.2
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.8e-35 155.6 231 38.1
CARHR284390 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.9e-34 151.0 168 47.0
CARHR290780 Cardamine hirsuta HOM05D002759 ORTHO05D003290 5.8e-33 147.9 199 42.2
AT4G24300 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 4.9e-32 144.8 95 74.7
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 2.4e-31 142.5 278 33.5
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 1.7e-29 136.3 400 30.0
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 1.3e-27 130.2 703 23.0
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 3.6e-27 128.6 763 24.8
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.4e-26 125.9 297 33.3
CARHR254470 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.9e-24 119.0 111 54.1
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 1.4e-23 116.7 774 23.3
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 3.5e-22 112.1 199 34.7
CARHR222370 Cardamine hirsuta HOM05D002759 ORTHO05D003290 7.9e-22 110.9 209 36.4
CsaV3_6G032170 Cucumis sativus L. HOM05D002759 ORTHO05D003290 2.3e-21 109.4 259 27.8
VMungo0251G3589 Vigna mungo HOM05D002759 ORTHO05D003290 5.6e-20 104.8 166 37.3
arahy.Tifrunner.gnm1.ann1.HX0PY9 Arachis hypogaea HOM05D002759 ORTHO05D003290 6.2e-19 101.3 261 28.7
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.1e-18 100.5 146 39.0
Hund17372 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.7e-16 93.2 487 22.2
CARHR284400 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.5e-15 89.4 98 44.9
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.5e-15 88.2 479 23.0
SHI26606 Sapria himalayana HOM05D002759 ORTHO05D003290 2.7e-14 85.9 183 31.7
RcHm_v2.0_Chr4g0428231 Rosa chinensis HOM05D002759 ORTHO05D020730 4.6e-14 85.1 119 40.3
FAN10G2628 Fragaria x ananassa HOM05D017399 ORTHO05D020730 6.0e-14 84.7 205 31.2
MD00G1111200 Malus domestica HOM05D002759 ORTHO05D003290 6.0e-14 84.7 150 32.0
FAN01G1856 Fragaria x ananassa HOM05D002759 ORTHO05D020730 1.8e-13 83.2 80 46.2
SEGI_36049 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.8e-13 83.2 232 25.4
MD08G1225400 Malus domestica HOM05D002759 ORTHO05D003290 8.7e-13 80.9 159 32.1
BcaC02g11622 Brassica carinata HOM05D002759 ORTHO05D003290 3.3e-12 79.0 108 48.1
C04p02400 Brassica napus HOM05D002759 ORTHO05D000588 3.3e-12 79.0 68 58.8
FAN10G4259 Fragaria x ananassa HOM05D017399 ORTHO05D020730 3.3e-12 79.0 205 30.2
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 6.2e-11 74.7 136 35.3
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.4e-10 72.8 100 38.0
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.1e-10 72.4 100 38.0
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 4.1e-10 72.0 315 24.8
SHI26605 Sapria himalayana HOM05D002759 ORTHO05D003290 4.1e-10 72.0 154 28.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.5e-09 70.1 141 31.9
Lsat_1_v5_gn_4_7760 Lactuca sativa HOM05D002759 ORTHO05D003290 5.0e-08 65.1 63 46.0
SHI26603 Sapria himalayana HOM05D002759 ORTHO05D003290 1.4e-07 63.5 189 28.0
FvH4_5g17590 Fragaria vesca HOM05D017399 ORTHO05D045498 2.5e-07 62.8 190 26.8
TAR636G1783 Trochodendron aralioides HOM05D002759 ORTHO05D021026 5.5e-07 61.6 45 60.0
vmacro01778 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 6.1e-06 58.2 195 24.6


User provided reference genes

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