Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23750 Brassica carinata HOM05D011913 ORTHO05D014322 3.9e-82 308.1 162 100.0
C02p40840 Brassica napus HOM05D011913 ORTHO05D014322 1.9e-68 262.7 163 86.5
BraA02t07560Z Brassica rapa HOM05D011913 ORTHO05D014322 4.6e-67 258.1 162 86.4
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.1e-60 236.9 148 85.8
AT4G12360 Arabidopsis thaliana HOM05D011913 ORTHO05D014322 1.9e-60 236.1 162 75.3
AL6G47220 Arabidopsis lyrata HOM05D011913 ORTHO05D014322 4.6e-59 231.5 162 72.2
Carub.0006s3150 Capsella rubella HOM05D011913 ORTHO05D014322 7.9e-51 204.1 160 65.6
CARHR253880 Cardamine hirsuta HOM05D011913 ORTHO05D014322 2.4e-47 192.6 162 66.7
Aa31LG9G10230 Aethionema arabicum HOM05D011913 ORTHO05D014322 4.4e-25 118.6 163 47.9
BolC2t10101H Brassica oleracea HOM05D011913 ORTHO05D014322 4.2e-20 102.1 139 47.5
BraA05t22070Z Brassica rapa HOM05D001482 ORTHO05D001499 5.5e-20 101.7 119 48.7
THA.LOC104806342 Tarenaya hassleriana HOM05D011913 ORTHO05D014322 3.6e-19 99.0 162 41.4
A05p32430 Brassica napus HOM05D001482 ORTHO05D001499 6.1e-19 98.2 119 47.1
Aa31LG9G10250 Aethionema arabicum HOM05D011913 ORTHO05D014322 5.7e-17 91.7 165 41.8
BcaC03g16288 Brassica carinata HOM05D011913 ORTHO05D014322 7.0e-15 84.7 114 44.7
Thhalv10029377m.g Eutrema salsugineum HOM05D011913 ORTHO05D014322 1.6e-14 83.6 132 43.9
Sp2g01820 Schrenkiella parvula HOM05D001858 ORTHO05D001838 1.9e-12 76.6 123 37.4
Aa31sc2410G10 Aethionema arabicum HOM05D011913 ORTHO05D014322 2.7e-11 72.8 120 43.3
Duzib205G0294 Durio zibethinus HOM05D001858 ORTHO05D001838 2.7e-11 72.8 131 37.4
Duzib205G1498 Durio zibethinus HOM05D001858 ORTHO05D001838 2.7e-11 72.8 131 37.4
CiPaw.11G149500 Carya illinoinensis HOM05D001858 ORTHO05D001838 3.6e-11 72.4 163 31.9
Cfa012784 Carpinus fangiana HOM05D001858 ORTHO05D001838 4.7e-11 72.0 124 32.3
Aa31LG2G330 Aethionema arabicum HOM05D001858 ORTHO05D001838 1.4e-10 70.5 160 31.9
CARHR049050 Cardamine hirsuta HOM05D001858 ORTHO05D001838 1.8e-10 70.1 160 30.6
THA.LOC104809448 Tarenaya hassleriana HOM05D001858 ORTHO05D001838 3.0e-10 69.3 129 31.8
Gohir.D03G160100 Gossypium hirsutum HOM05D001858 ORTHO05D001838 5.2e-10 68.6 157 31.2
Gorai.003G168600 Gossypium raimondii HOM05D001858 ORTHO05D001838 5.2e-10 68.6 157 31.2
Prupe.5G077100 Prunus persica HOM05D001858 ORTHO05D001838 5.2e-10 68.6 151 33.1
HanXRQChr13g0393201 Helianthus annuus HOM05D001858 ORTHO05D001838 8.8e-10 67.8 122 34.4
Manes.01G074600 Manihot esculenta HOM05D001858 ORTHO05D001838 1.2e-09 67.4 123 32.5
CANSAT21G1007 Cannabis sativa HOM05D001858 ORTHO05D001838 2.0e-09 66.6 159 30.2
Gohir.A03G014300 Gossypium hirsutum HOM05D001858 ORTHO05D001838 3.4e-09 65.9 157 30.6
HanXRQChr02g0049661 Helianthus annuus HOM05D001858 ORTHO05D001838 2.8e-08 62.8 154 26.6
Lalb_Chr16g0389531 Lupinus albus HOM05D001858 ORTHO05D001838 4.9e-08 62.0 121 33.1
Eucgr.E00466 Eucalyptus grandis HOM05D001858 ORTHO05D001838 6.3e-08 61.6 125 30.4
Haze_08591 Corylus avellana HOM05D001858 ORTHO05D001838 8.3e-08 61.2 75 41.3
Nn4g26343 Nelumbo nucifera HOM05D001858 ORTHO05D001838 8.3e-08 61.2 125 36.8
Potri.003G113900 Populus trichocarpa HOM05D001858 ORTHO05D001838 1.1e-07 60.8 123 31.7
Medtr4g101780 Medicago truncatula HOM05D001858 ORTHO05D001838 1.4e-07 60.5 161 28.6
PGR042G3218 Punica granatum HOM05D001858 ORTHO05D001838 1.8e-07 60.1 163 29.4
Haze_08594 Corylus avellana HOM05D001858 ORTHO05D001838 2.4e-07 59.7 88 37.5
ECA233G2544 Erigeron canadensis HOM05D001858 ORTHO05D001838 3.1e-07 59.3 150 30.7
FAN18G0727 Fragaria x ananassa HOM05D001858 ORTHO05D001838 4.1e-07 58.9 162 32.1
FAN08G1163 Fragaria x ananassa HOM05D001858 ORTHO05D001838 5.4e-07 58.5 162 32.1
Sc07g0009400 Simmondsia chinensis HOM05D001858 ORTHO05D001838 5.4e-07 58.5 125 33.6
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 7.0e-07 58.2 71 45.1
BcaB05g23752 Brassica carinata HOM05D000787 ORTHO05D000411 1.2e-06 57.4 69 46.4
FvH4_5g00460 Fragaria vesca HOM05D001858 ORTHO05D001838 1.6e-06 57.0 162 30.9
Gohir.A12G220350 Gossypium hirsutum HOM05D001858 ORTHO05D001838 2.7e-06 56.2 86 40.7
FAN13G1983 Fragaria x ananassa HOM05D001858 ORTHO05D001838 3.5e-06 55.8 133 30.8


User provided reference genes

Program Settings