Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23747 Brassica carinata HOM05D001286 ORTHO05D000440 8.8e-124 446.8 203 100.0
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 3.0e-79 298.9 154 88.3
BraA02t07559Z Brassica rapa HOM05D001286 ORTHO05D000440 2.1e-77 292.7 154 87.0
AT4G12370 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 5.1e-63 245.0 157 74.5
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.9e-62 243.0 158 74.7
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 7.6e-59 231.1 156 72.4
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 7.6e-59 231.1 156 72.4
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.8e-58 228.8 202 59.9
Sp6g05220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.3e-57 224.2 158 70.3
Thhalv10029362m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 2.8e-53 212.6 142 73.9
Carub.0006s3151 Capsella rubella HOM05D001286 ORTHO05D000440 9.9e-51 204.1 186 59.7
C02p40810 Brassica napus HOM05D001286 ORTHO05D000440 4.2e-49 198.7 97 91.8
BcaC03g16285 Brassica carinata HOM05D001286 ORTHO05D000440 1.3e-47 193.7 97 88.7
BolC2t10098H Brassica oleracea HOM05D001286 ORTHO05D000440 1.3e-47 193.7 97 88.7
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 4.5e-35 152.1 155 45.2
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.8e-34 149.1 155 46.5
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.1e-33 147.5 152 46.7
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 5.5e-33 145.2 147 47.6
Thhalv10029151m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 3.9e-31 139.0 138 55.1
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.6e-30 134.4 151 46.4
AT4G10700 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.3e-29 134.0 123 56.9
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.1e-29 133.3 153 48.4
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 1.1e-28 131.0 170 41.2
AT4G10660 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.4e-28 130.6 146 50.7
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.4e-28 129.8 157 43.9
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 3.1e-28 129.4 170 40.6
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 3.1e-28 129.4 170 40.6
BcaC04g23040 Brassica carinata HOM05D001286 ORTHO05D000440 5.9e-27 125.2 168 39.3
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 7.6e-27 124.8 153 42.5
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 6.5e-26 121.7 167 40.7
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.9e-25 120.2 149 43.6
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 3.2e-25 119.4 167 40.1
Lj3P997T36 Lonicera japonica HOM05D001286 ORTHO05D000440 2.7e-24 116.3 216 37.5
CARHR253820 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.5e-24 115.9 129 45.0
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 8.7e-23 111.3 145 42.1
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 3.3e-22 109.4 145 40.0
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 4.3e-22 109.0 145 40.7
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.3e-21 107.5 145 40.0
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 1.6e-21 107.1 145 41.4
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 1.6e-21 107.1 145 41.4
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 6.3e-21 105.1 147 42.2
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 6.3e-21 105.1 145 40.0
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 8.2e-21 104.8 145 39.3
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 1.4e-20 104.0 152 39.5
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 1.4e-20 104.0 148 41.9
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 1.8e-20 103.6 145 42.1
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 1.8e-20 103.6 145 40.7
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 1.8e-20 103.6 145 40.0
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 2.4e-20 103.2 153 40.5
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 4.1e-20 102.4 147 41.5
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 4.1e-20 102.4 169 37.3
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 4.1e-20 102.4 169 37.3
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 5.3e-20 102.1 155 40.6
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 6.9e-20 101.7 153 41.2
CARHR253830 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.9e-20 101.7 156 39.1
MD12G1025100 Malus domestica HOM05D001286 ORTHO05D000440 6.9e-20 101.7 145 39.3
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 9.0e-20 101.3 150 42.0
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 9.0e-20 101.3 145 39.3
Sp6g05180 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.0e-20 101.3 110 47.3
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 1.2e-19 100.9 147 40.8
C03p35920 Brassica napus HOM05D001286 ORTHO05D000440 1.5e-19 100.5 114 48.2
BolC3t15900H Brassica oleracea HOM05D001286 ORTHO05D000440 1.5e-19 100.5 114 48.2
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 1.5e-19 100.5 146 39.0
CARHR216300 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.5e-19 100.5 150 40.0
A03p29660 Brassica napus HOM05D001286 ORTHO05D000440 2.0e-19 100.1 185 36.8
BraA03t12160Z Brassica rapa HOM05D001286 ORTHO05D000440 2.0e-19 100.1 185 36.8
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 2.6e-19 99.8 150 42.0
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 3.4e-19 99.4 145 39.3
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 4.5e-19 99.0 139 39.6
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 4.5e-19 99.0 139 40.3
BcaC01g04596 Brassica carinata HOM05D001286 ORTHO05D000440 5.9e-19 98.6 114 47.4
BcaC01g04597 Brassica carinata HOM05D001286 ORTHO05D000440 5.9e-19 98.6 114 47.4
A03p29650 Brassica napus HOM05D001286 ORTHO05D000440 5.9e-19 98.6 114 48.2
BraA03t12159Z Brassica rapa HOM05D001286 ORTHO05D000440 5.9e-19 98.6 114 48.2
BraA02t07603Z Brassica rapa HOM05D001286 ORTHO05D027858 7.7e-19 98.2 154 39.6
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 7.7e-19 98.2 154 37.7
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 7.7e-19 98.2 168 37.5
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.0e-18 97.8 142 40.1
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.0e-18 97.8 142 40.1
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 1.0e-18 97.8 142 40.1
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 1.0e-18 97.8 148 39.9
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 1.7e-18 97.1 162 38.9
TWI77G1030 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.7e-18 97.1 139 41.7
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 2.2e-18 96.7 162 38.9
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 2.2e-18 96.7 154 37.7
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.9e-18 96.3 150 40.7
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 2.9e-18 96.3 151 37.1
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 2.9e-18 96.3 147 38.1
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 3.8e-18 95.9 154 37.7
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 3.8e-18 95.9 139 39.6
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 5.0e-18 95.5 145 38.6
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 6.5e-18 95.1 162 35.8
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 6.5e-18 95.1 162 35.8
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 6.5e-18 95.1 162 35.8
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 6.5e-18 95.1 111 48.6
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 6.5e-18 95.1 139 38.1
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 6.5e-18 95.1 138 40.6
BcaB01g02647 Brassica carinata HOM05D001286 ORTHO05D000440 8.5e-18 94.7 164 36.0
BcaB01g02678 Brassica carinata HOM05D001286 ORTHO05D000440 8.5e-18 94.7 167 32.9
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 1.1e-17 94.4 152 39.5
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 1.9e-17 93.6 147 38.8
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 1.9e-17 93.6 138 40.6
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.9e-17 93.6 164 38.4
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.9e-17 93.6 146 37.7
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 2.5e-17 93.2 147 37.4
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 2.5e-17 93.2 152 37.5
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.5e-17 93.2 124 39.5
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 4.2e-17 92.4 164 38.4
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 7.2e-17 91.7 152 34.2
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 7.2e-17 91.7 151 36.4
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 7.2e-17 91.7 152 34.2
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 1.2e-16 90.9 150 36.7
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 1.6e-16 90.5 101 45.5
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 1.6e-16 90.5 101 45.5
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 2.7e-16 89.7 150 36.0
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 2.7e-16 89.7 150 36.7
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 3.6e-16 89.4 150 36.7
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 4.6e-16 89.0 147 35.4
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 4.6e-16 89.0 151 36.4
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 4.6e-16 89.0 151 36.4
Medtr7g104785 Medicago truncatula HOM05D001286 ORTHO05D000440 4.6e-16 89.0 138 36.2
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 6.1e-16 88.6 148 37.8
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 6.1e-16 88.6 101 44.6
BcaB01g02651 Brassica carinata HOM05D001286 ORTHO05D000440 1.8e-15 87.0 114 46.5
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 1.8e-15 87.0 145 36.6
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 2.3e-15 86.7 158 33.5
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 2.3e-15 86.7 151 35.1
unitig_744.g24700 Utricularia gibba HOM05D001286 ORTHO05D000440 2.3e-15 86.7 147 32.7
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 3.9e-15 85.9 144 36.8
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 6.7e-15 85.1 116 38.8
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 6.7e-15 85.1 158 33.5
FvH4_6g18890 Fragaria vesca HOM05D001286 ORTHO05D000440 8.8e-15 84.7 147 34.0
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 8.8e-15 84.7 116 38.8
FAN14G2386 Fragaria x ananassa HOM05D001286 ORTHO05D000440 1.1e-14 84.3 147 33.3
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 1.5e-14 84.0 136 39.7
FAN05G3626 Fragaria x ananassa HOM05D001286 ORTHO05D000440 2.0e-14 83.6 147 33.3
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 2.5e-14 83.2 137 35.8
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 7.4e-14 81.6 146 34.2
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 9.7e-14 81.3 148 35.1
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 1.7e-13 80.5 145 32.4
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 1.7e-13 80.5 147 32.7
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 3.7e-13 79.3 158 37.3
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 3.7e-13 79.3 158 37.3
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 3.7e-13 79.3 158 37.3
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.7e-13 79.3 156 37.8
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.1e-12 77.8 147 36.1
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 2.4e-12 76.6 163 36.2
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 2.4e-12 76.6 163 36.2
Carub.0002s0673 Capsella rubella HOM05D001286 ORTHO05D000440 9.1e-12 74.7 152 33.6
A02p26050 Brassica napus HOM05D001286 ORTHO05D000440 1.5e-11 73.9 112 41.1
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.5e-11 73.9 160 35.6
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.6e-11 73.2 121 41.3
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 5.9e-11 72.0 139 33.1
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 2.9e-10 69.7 153 36.6
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 2.9e-10 69.7 156 34.6
Migut.O00798 Erythranthe guttata HOM05D001286 ORTHO05D000440 1.4e-09 67.4 186 26.9
A02p26090 Brassica napus HOM05D001286 ORTHO05D027858 4.2e-09 65.9 70 45.7
Aa31csc81G80 Aethionema arabicum HOM05D001286 ORTHO05D000440 3.6e-08 62.8 135 34.8
Aa31LG2G11100 Aethionema arabicum HOM05D001286 ORTHO05D000440 3.0e-07 59.7 132 34.8
Medtr7g104760 Medicago truncatula HOM05D001286 ORTHO05D000440 8.8e-07 58.2 128 32.0


User provided reference genes

Program Settings