Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23738 Brassica carinata HOM05D003177 ORTHO05D003481 1.3e-41 172.6 85 100.0
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 3.7e-23 111.3 63 85.7
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 4.0e-22 107.8 63 84.1
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 4.0e-22 107.8 63 84.1
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 2.6e-21 105.1 63 81.0
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 2.6e-21 105.1 63 81.0
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 2.6e-21 105.1 63 81.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 6.5e-20 100.5 63 76.2
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 9.3e-19 96.7 63 76.2
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 7.9e-18 93.6 63 74.6
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.0e-17 93.2 63 74.6
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.8e-17 92.4 63 74.6
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.1e-16 89.7 62 72.6
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 9.4e-11 70.1 65 50.8
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.2e-10 69.7 61 55.7
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.8e-09 65.9 62 53.2
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 2.3e-09 65.5 62 51.6
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 3.0e-09 65.1 63 50.8
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 3.9e-09 64.7 63 46.0
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 6.7e-09 63.9 63 46.0
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 6.7e-09 63.9 63 46.0
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.5e-08 62.8 58 51.7
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.9e-08 62.4 63 44.4
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 4.3e-08 61.2 62 50.0
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 5.7e-08 60.8 62 48.4
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 7.4e-08 60.5 72 44.4
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 7.4e-08 60.5 72 44.4
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 7.4e-08 60.5 72 44.4
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-07 59.7 62 48.4
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.3e-07 59.7 63 44.4
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.2e-07 58.9 62 48.4
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 2.8e-07 58.5 63 42.9
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 4.8e-07 57.8 62 45.2
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 6.3e-07 57.4 59 49.2
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 6.3e-07 57.4 62 41.9
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.3e-07 57.4 63 42.9
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.3e-07 57.4 63 42.9
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 6.3e-07 57.4 61 42.6
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.1e-06 56.6 60 45.0
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 1.1e-06 56.6 70 48.6
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.4e-06 56.2 72 40.3
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.4e-06 56.2 59 42.4
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.8e-06 55.8 63 39.7
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 1.8e-06 55.8 62 45.2
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 2.4e-06 55.5 63 41.3
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.4e-06 55.5 64 40.6
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 3.1e-06 55.1 62 43.5
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 3.1e-06 55.1 64 40.6
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 3.1e-06 55.1 62 43.5
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 5.3e-06 54.3 59 49.2
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 5.3e-06 54.3 62 41.9
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 6.9e-06 53.9 60 46.7
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 9.1e-06 53.5 63 42.9
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.1e-06 53.5 36 61.1
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 9.1e-06 53.5 36 61.1
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 9.1e-06 53.5 36 61.1
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 9.1e-06 53.5 62 40.3


User provided reference genes

Program Settings