Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23724 Brassica carinata HOM05D003422 ORTHO05D004263 2.1e-36 155.2 82 100.0
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 3.1e-19 98.2 69 78.3
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 9.0e-19 96.7 69 76.8
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.0e-18 95.5 69 75.4
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.0e-18 95.5 69 75.4
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.0e-18 95.5 69 75.4
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 2.6e-18 95.1 69 75.4
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 5.8e-18 94.0 68 75.0
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 5.8e-18 94.0 68 75.0
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 5.8e-18 94.0 68 75.0
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 1.0e-17 93.2 69 73.9
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 3.8e-17 91.3 69 76.8
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 8.4e-17 90.1 68 72.1
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 2.7e-15 85.1 65 70.8
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 3.3e-13 78.2 79 63.3
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 3.7e-12 74.7 69 62.3
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 9.0e-11 70.1 79 57.0
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.5e-10 69.3 62 62.9
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 3.4e-10 68.2 78 59.0
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 5.8e-10 67.4 80 57.5
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 5.8e-10 67.4 79 55.7
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 7.6e-10 67.0 79 51.9
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.0e-09 66.6 80 56.2
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 1.0e-09 66.6 79 54.4
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.0e-09 66.6 79 55.7
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.2e-09 65.5 79 59.5
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 3.8e-09 64.7 80 53.8
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.8e-09 64.7 87 52.9
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.8e-09 64.7 79 59.5
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 5.0e-09 64.3 79 60.8
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.0e-09 64.3 80 57.5
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 5.0e-09 64.3 79 57.0
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 6.5e-09 63.9 80 55.0
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 8.4e-09 63.5 79 51.9
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 8.4e-09 63.5 79 57.0
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 8.4e-09 63.5 70 55.7
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 1.1e-08 63.2 70 51.4
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.1e-08 63.2 80 57.5
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 1.1e-08 63.2 83 51.8
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.4e-08 62.8 79 59.5
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 1.9e-08 62.4 79 57.0
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.9e-08 62.4 80 56.2
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.9e-08 62.4 80 55.0
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.2e-08 61.6 80 56.2
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 4.2e-08 61.2 79 51.9
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 5.5e-08 60.8 68 54.4
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.1e-08 60.5 59 59.3
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 7.1e-08 60.5 60 60.0
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.2e-07 59.7 79 53.2
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.6e-07 59.3 64 54.7
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.6e-07 59.3 79 51.9
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 1.6e-07 59.3 80 53.8
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 2.1e-07 58.9 79 49.4
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 2.1e-07 58.9 67 53.7
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.1e-07 58.9 67 53.7
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 2.1e-07 58.9 67 53.7
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 2.7e-07 58.5 59 59.3
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 3.5e-07 58.2 82 56.1
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 3.5e-07 58.2 82 56.1
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 3.5e-07 58.2 80 52.5
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 3.5e-07 58.2 79 53.2
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.6e-07 57.8 74 54.1
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 6.1e-07 57.4 79 53.2
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.0e-06 56.6 79 50.6
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 1.3e-06 56.2 79 49.4
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.3e-06 56.2 82 52.4
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.3e-06 56.2 73 47.9
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.3e-06 56.2 82 45.1
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-06 55.8 79 48.1
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 1.8e-06 55.8 79 54.4
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.8e-06 55.8 82 50.0
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.8e-06 55.8 82 47.6
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.8e-06 55.8 82 48.8
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 2.3e-06 55.5 70 54.3
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 3.0e-06 55.1 69 52.2
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 3.0e-06 55.1 57 56.1
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.0e-06 55.1 87 47.1
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.9e-06 54.7 62 51.6
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.9e-06 54.7 79 48.1
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 3.9e-06 54.7 64 51.6
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 3.9e-06 54.7 72 54.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 5.1e-06 54.3 80 50.0
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 5.1e-06 54.3 80 50.0
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 5.1e-06 54.3 64 51.6
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 6.7e-06 53.9 70 52.9
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 8.7e-06 53.5 77 51.9
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 8.7e-06 53.5 69 50.7
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.7e-06 53.5 52 63.5
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.7e-06 53.5 52 61.5


User provided reference genes

Program Settings