Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23714 Brassica carinata HOM05D001679 ORTHO05D039673 1.6e-39 165.6 83 100.0
BcaC02g07819 Brassica carinata HOM05D001679 ORTHO05D003617 4.2e-16 87.8 47 85.1
A04p25770 Brassica napus HOM05D001679 ORTHO05D003617 9.4e-16 86.7 45 88.9
C04p63000 Brassica napus HOM05D001679 ORTHO05D003617 9.4e-16 86.7 45 88.9
BolC4t27777H Brassica oleracea HOM05D001679 ORTHO05D003617 9.4e-16 86.7 45 88.9
BraA04t18080Z Brassica rapa HOM05D001679 ORTHO05D003617 9.4e-16 86.7 45 88.9
BcaC08g43335 Brassica carinata HOM05D001679 ORTHO05D003617 1.0e-14 83.2 43 83.7
AL4G29140 Arabidopsis lyrata HOM05D001679 ORTHO05D003617 1.4e-14 82.8 39 94.9
Thhalv10017251m.g Eutrema salsugineum HOM05D001679 ORTHO05D003617 1.4e-14 82.8 39 94.9
Sp4g15810 Schrenkiella parvula HOM05D001679 ORTHO05D003617 1.8e-14 82.4 39 94.9
AT2G33470 Arabidopsis thaliana HOM05D001679 ORTHO05D003617 3.0e-14 81.6 39 92.3
A06p02260 Brassica napus HOM05D001679 ORTHO05D003617 3.0e-14 81.6 43 81.4
Carub.0004s1510 Capsella rubella HOM05D001679 ORTHO05D003617 5.2e-14 80.9 39 92.3
BcaB06g28691 Brassica carinata HOM05D001679 ORTHO05D003617 8.8e-14 80.1 39 92.3
BcaC02g11433 Brassica carinata HOM05D001679 ORTHO05D003617 2.6e-13 78.6 39 87.2
A05p12080 Brassica napus HOM05D001679 ORTHO05D003617 2.6e-13 78.6 39 87.2
C04p15640 Brassica napus HOM05D001679 ORTHO05D003617 2.6e-13 78.6 39 87.2
BolC4t23132H Brassica oleracea HOM05D001679 ORTHO05D003617 2.6e-13 78.6 39 87.2
BraA05t20151Z Brassica rapa HOM05D001679 ORTHO05D003617 2.6e-13 78.6 39 87.2
Aa31LG5G3820 Aethionema arabicum HOM05D001679 ORTHO05D003617 3.4e-13 78.2 39 87.2
CARHR127480 Cardamine hirsuta HOM05D001679 ORTHO05D003617 7.5e-13 77.0 39 87.2
Cpa.g.sc380.3 Carica papaya HOM05D001679 ORTHO05D003617 1.3e-12 76.3 39 87.2
Nn1g02882 Nelumbo nucifera HOM05D001679 ORTHO05D003617 1.7e-12 75.9 39 87.2
Haze_11408 Corylus avellana HOM05D001679 ORTHO05D003617 2.2e-12 75.5 40 82.5
Lsat_1_v5_gn_5_182741 Lactuca sativa HOM05D001679 ORTHO05D003617 2.8e-12 75.1 40 82.5
PSO017G3373 Papaver somniferum HOM05D001679 ORTHO05D003617 2.8e-12 75.1 39 84.6
PSO063G3573 Papaver somniferum HOM05D001679 ORTHO05D003617 2.8e-12 75.1 39 84.6
PGR004G2242 Punica granatum HOM05D001679 ORTHO05D003617 3.7e-12 74.7 39 82.1
Nn3g19707 Nelumbo nucifera HOM05D001679 ORTHO05D003617 4.8e-12 74.3 39 84.6
TWI73G0158 Tripterygium wilfordii HOM05D001679 ORTHO05D003617 4.8e-12 74.3 39 84.6
GSVIVG01027847001 Vitis vinifera HOM05D001679 ORTHO05D003617 4.8e-12 74.3 44 81.8
BolC6t35795H Brassica oleracea HOM05D001679 ORTHO05D003617 6.3e-12 73.9 39 84.6
COL.COLO4_15912 Corchorus olitorius HOM05D001679 ORTHO05D003617 6.3e-12 73.9 39 82.1
Dinv34648 Davidia involucrata HOM05D001679 ORTHO05D003617 6.3e-12 73.9 39 82.1
Hma1.2p1_0112F.1_g054250 Hydrangea macrophylla HOM05D001679 ORTHO05D003617 6.3e-12 73.9 39 79.5
Dinv22385 Davidia involucrata HOM05D001679 ORTHO05D003617 8.3e-12 73.6 40 82.5
TAR633G2574 Trochodendron aralioides HOM05D001679 ORTHO05D003617 1.1e-11 73.2 39 82.1
Cfa014725 Carpinus fangiana HOM05D001679 ORTHO05D003617 1.4e-11 72.8 39 82.1
ECA248G2136 Erigeron canadensis HOM05D001679 ORTHO05D003617 1.4e-11 72.8 40 80.0
Eucgr.H03025 Eucalyptus grandis HOM05D001679 ORTHO05D003617 1.4e-11 72.8 39 82.1
TAR362G1197 Trochodendron aralioides HOM05D001679 ORTHO05D003617 1.4e-11 72.8 39 84.6
BcaB02g10566 Brassica carinata HOM05D001679 ORTHO05D003617 1.8e-11 72.4 36 86.1
THA.LOC104801078 Tarenaya hassleriana HOM05D001679 ORTHO05D003617 1.8e-11 72.4 39 82.1
THA.LOC104815995 Tarenaya hassleriana HOM05D001679 ORTHO05D003617 1.8e-11 72.4 39 84.6
Ciclev10005918m.g Citrus clementina HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 79.5
Gohir.A10G109800 Gossypium hirsutum HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 79.5
Gohir.D10G156000 Gossypium hirsutum HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 79.5
Gorai.011G176400 Gossypium raimondii HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 79.5
MBI07_g31090_MAGBIO Magnolia biondii HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 79.5
TAR636G2720 Trochodendron aralioides HOM05D001679 ORTHO05D003617 3.1e-11 71.6 39 82.1
CAN.G771.35 Capsicum annuum HOM05D001679 ORTHO05D003617 4.1e-11 71.2 39 79.5
Duzib052G0434 Durio zibethinus HOM05D001679 ORTHO05D003617 4.1e-11 71.2 39 79.5
Manes.03G162700 Manihot esculenta HOM05D001679 ORTHO05D003617 4.1e-11 71.2 39 82.1
SalBow4G1067 Salvia bowleyana HOM05D001679 ORTHO05D003617 4.1e-11 71.2 39 82.1
TAR633G0122 Trochodendron aralioides HOM05D001679 ORTHO05D003617 4.1e-11 71.2 39 79.5
Actinidia30149 Actinidia chinensis HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 82.1
Gohir.A02G040200 Gossypium hirsutum HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 76.9
Gohir.D02G046300 Gossypium hirsutum HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 76.9
Gorai.005G051100 Gossypium raimondii HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 76.9
Manes.15G042800 Manihot esculenta HOM05D001679 ORTHO05D003617 5.4e-11 70.9 36 88.9
Medtr1g075700 Medicago truncatula HOM05D001679 ORTHO05D003617 5.4e-11 70.9 42 73.8
QL06p018685 Quercus lobata HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 79.5
Thecc.04G258500 Theobroma cacao HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 76.9
TWI09G0275 Tripterygium wilfordii HOM05D001679 ORTHO05D003617 5.4e-11 70.9 39 84.6
ATR0736G094 Amborella trichopoda HOM05D001679 ORTHO05D003617 7.0e-11 70.5 39 82.1
Oeu039677.1 Olea europaea HOM05D001679 ORTHO05D003617 7.0e-11 70.5 39 76.9
Potri.008G168800 Populus trichocarpa HOM05D001679 ORTHO05D003617 7.0e-11 70.5 37 83.8
Rhsim04G0176600 Rhododendron simsii HOM05D001679 ORTHO05D003617 7.0e-11 70.5 44 65.9
Lsat_1_v5_gn_1_74741 Lactuca sativa HOM05D001679 ORTHO05D003617 9.1e-11 70.1 40 70.0
Rhsim13G0037000 Rhododendron simsii HOM05D001679 ORTHO05D003617 9.1e-11 70.1 39 79.5
SGA_v2.0_scaffold138G35205 Striga asiatica HOM05D001679 ORTHO05D003617 9.1e-11 70.1 39 82.1
Aqoxy2G03694 Aquilegia oxysepala HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 76.9
MSTRG.18335 Avicennia marina HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 79.5
Ca_09852_v3 Cicer arietinum L. HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 79.5
Migut.D00449 Erythranthe guttata HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 76.9
Glyma.16G114300 Glycine max HOM05D001679 ORTHO05D039673 1.2e-10 69.7 40 77.5
Lj2A1147G72 Lonicera japonica HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 76.9
Nitab4.5_0000917g0110 Nicotiana tabacum HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 79.5
Hund03053 Selenicereus undatus HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 76.9
vmacro02683 Vaccinium macrocarpon HOM05D001679 ORTHO05D003617 1.2e-10 69.7 39 76.9
Cc01_g18090 Coffea canephora HOM05D001679 ORTHO05D003617 1.6e-10 69.3 39 79.5
Duzib151G0441 Durio zibethinus HOM05D001679 ORTHO05D003617 1.6e-10 69.3 39 74.4
Nitab4.5_0001919g0080 Nicotiana tabacum HOM05D001679 ORTHO05D003617 1.6e-10 69.3 39 76.9
CANSAT01G0817 Cannabis sativa HOM05D001679 ORTHO05D003617 2.0e-10 68.9 39 79.5
DCAR_012561 Daucus carota HOM05D001679 ORTHO05D003617 2.0e-10 68.9 39 79.5
Lj5g0025799 Lotus japonicus HOM05D001679 ORTHO05D003617 2.0e-10 68.9 39 76.9
Sabra08G0128700 Salix brachista HOM05D001679 ORTHO05D003617 2.0e-10 68.9 38 81.6
TPR.G10068 Trifolium pratense HOM05D001679 ORTHO05D003617 2.0e-10 68.9 39 76.9
HPP92_005133 Vanilla planifolia HOM05D001679 ORTHO05D003617 2.0e-10 68.9 39 82.1
CSS0026063 Camellia sinensis var. sinensis HOM05D001679 ORTHO05D003617 2.7e-10 68.6 40 77.5
Oeu058819.1 Olea europaea HOM05D001679 ORTHO05D003617 2.7e-10 68.6 39 79.5
Oeu058821.1 Olea europaea HOM05D001679 ORTHO05D003617 2.7e-10 68.6 39 79.5
arahy.Tifrunner.gnm1.ann1.R1GQBP Arachis hypogaea HOM05D001679 ORTHO05D003617 3.5e-10 68.2 47 63.8
Dinv27068 Davidia involucrata HOM05D001679 ORTHO05D003617 3.5e-10 68.2 39 69.2
MELO3C006409.2 Cucumis melo HOM05D001679 ORTHO05D003617 4.5e-10 67.8 39 76.9
Peaxi162Scf00013g01234 Petunia axillaris HOM05D001679 ORTHO05D003617 4.5e-10 67.8 39 74.4
Peaxi162Scf00392g00735 Petunia axillaris HOM05D001679 ORTHO05D003617 4.5e-10 67.8 39 66.7
PGSC0003DMG401020076 Solanum tuberosum HOM05D001679 ORTHO05D003617 4.5e-10 67.8 39 74.4
Atru.chr4.2020 Acer truncatum HOM05D001679 ORTHO05D003617 5.9e-10 67.4 39 79.5
Haze_11409 Corylus avellana HOM05D001679 ORTHO05D003617 5.9e-10 67.4 39 71.8
Glyma.20G207400 Glycine max HOM05D001679 ORTHO05D003617 5.9e-10 67.4 39 79.5
Psat6g104320 Pisum sativum HOM05D001679 ORTHO05D003617 5.9e-10 67.4 39 76.9
arahy.Tifrunner.gnm1.ann1.ET3TLD Arachis hypogaea HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 76.9
CsaV3_3G011960 Cucumis sativus L. HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 76.9
Glyma.02G004000 Glycine max HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 76.9
Glyma.10G004400 Glycine max HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 76.9
MD16G1221400 Malus domestica HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 76.9
Sed0022089 Sechium edule HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 74.4
Solyc06g083810.3 Solanum lycopersicum HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 74.4
Sopen06g035220 Solanum pennellii HOM05D001679 ORTHO05D003617 7.7e-10 67.0 39 74.4
unitig_22.g5452 Utricularia gibba HOM05D001679 ORTHO05D003617 1.0e-09 66.6 39 76.9
Potri.010G069600 Populus trichocarpa HOM05D001679 ORTHO05D003617 1.3e-09 66.2 38 73.7
Sc13g0005830 Simmondsia chinensis HOM05D001679 ORTHO05D003617 1.3e-09 66.2 39 76.9
vmacro08511 Vaccinium macrocarpon HOM05D001679 ORTHO05D003617 1.3e-09 66.2 39 71.8
CSS0023290 Camellia sinensis var. sinensis HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 76.9
ClCG05G004230 Citrullus lanatus HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 74.4
FvH4_4g03970 Fragaria vesca HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 74.4
FAN12G1184 Fragaria x ananassa HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 74.4
Phvul.010G068692 Phaseolus vulgaris HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 76.9
Sabra10G0037500 Salix brachista HOM05D001679 ORTHO05D003617 1.7e-09 65.9 38 73.7
VMungo0720G2496 Vigna mungo HOM05D001679 ORTHO05D003617 1.7e-09 65.9 39 76.9
arahy.Tifrunner.gnm1.ann1.02UU0S Arachis hypogaea HOM05D001679 ORTHO05D003617 2.2e-09 65.5 40 75.0
arahy.Tifrunner.gnm1.ann1.23KKED Arachis hypogaea HOM05D001679 ORTHO05D003617 2.2e-09 65.5 40 75.0
Medtr1g075710 Medicago truncatula HOM05D001679 ORTHO05D003617 2.2e-09 65.5 39 74.4
CAN.G220.14 Capsicum annuum HOM05D001679 ORTHO05D003617 2.9e-09 65.1 39 64.1
CiPaw.01G182100 Carya illinoinensis HOM05D001679 ORTHO05D003617 2.9e-09 65.1 39 69.2
Os07g0445800 Oryza sativa ssp. japonica HOM05D001679 ORTHO05D003617 2.9e-09 65.1 39 74.4
Psat6g117800 Pisum sativum HOM05D001679 ORTHO05D003617 2.9e-09 65.1 39 71.8
Actinidia20818 Actinidia chinensis HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 66.7
Cfa014726 Carpinus fangiana HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 69.2
Ca_12145_v3 Cicer arietinum L. HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 74.4
Ca_30193_v3 Cicer arietinum L. HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 74.4
FAN17G1585 Fragaria x ananassa HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 71.8
Lalb_Chr21g0312131 Lupinus albus HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 71.8
SGA_v2.0_scaffold67G22723 Striga asiatica HOM05D001679 ORTHO05D003617 5.0e-09 64.3 39 64.1
CiPaw.02G110400 Carya illinoinensis HOM05D001679 ORTHO05D003617 6.5e-09 63.9 39 69.2
ECA248G0118 Erigeron canadensis HOM05D001679 ORTHO05D003617 6.5e-09 63.9 39 61.5
Glyma.10G182600 Glycine max HOM05D001679 ORTHO05D003617 6.5e-09 63.9 39 76.9
Lalb_Chr02g0150251 Lupinus albus HOM05D001679 ORTHO05D003617 6.5e-09 63.9 39 69.2
Sed0009103 Sechium edule HOM05D001679 ORTHO05D003617 6.5e-09 63.9 39 69.2
RcHm_v2.0_Chr6g0287551 Rosa chinensis HOM05D001679 ORTHO05D003617 8.5e-09 63.5 39 71.8
Zm00001eb271080 Zea mays HOM05D001679 ORTHO05D003617 8.5e-09 63.5 39 71.8
EL10Ac3g04986 Beta vulgaris HOM05D001679 ORTHO05D003617 1.1e-08 63.2 39 76.9
EL10Ac7g17618 Beta vulgaris HOM05D001679 ORTHO05D003617 1.1e-08 63.2 39 69.2
FAN22G1803 Fragaria x ananassa HOM05D001679 ORTHO05D003617 1.1e-08 63.2 39 71.8
Lj1g0015315 Lotus japonicus HOM05D001679 ORTHO05D003617 1.1e-08 63.2 40 62.5
RcHm_v2.0_Chr4g0394201 Rosa chinensis HOM05D001679 ORTHO05D003617 1.1e-08 63.2 39 71.8
Sopen09g033210 Solanum pennellii HOM05D001679 ORTHO05D003617 1.1e-08 63.2 39 61.5
Actinidia35797 Actinidia chinensis HOM05D001679 ORTHO05D003617 1.5e-08 62.8 39 64.1
AUR62002159 Chenopodium quinoa HOM05D001679 ORTHO05D003617 1.5e-08 62.8 38 73.7
AUR62044471 Chenopodium quinoa HOM05D001679 ORTHO05D003617 1.5e-08 62.8 38 73.7
Prupe.1G041700 Prunus persica HOM05D001679 ORTHO05D003617 1.5e-08 62.8 39 71.8
unitig_60.g25744 Utricularia gibba HOM05D001679 ORTHO05D003617 1.5e-08 62.8 39 69.2
unitig_748.g7331 Utricularia gibba HOM05D001679 ORTHO05D003617 1.5e-08 62.8 39 66.7
CSS0043301 Camellia sinensis var. sinensis HOM05D001679 ORTHO05D003617 1.9e-08 62.4 39 66.7
Os02g0622400 Oryza sativa ssp. japonica HOM05D001679 ORTHO05D003617 1.9e-08 62.4 39 71.8
Prupe.8G220300 Prunus persica HOM05D001679 ORTHO05D003617 1.9e-08 62.4 37 73.0
THA.LOC104826089 Tarenaya hassleriana HOM05D001679 ORTHO05D003617 1.9e-08 62.4 39 69.2
Lalb_Chr06g0169191 Lupinus albus HOM05D001679 ORTHO05D003617 3.2e-08 61.6 39 66.7
Zm00001eb185090 Zea mays HOM05D001679 ORTHO05D003617 4.2e-08 61.2 39 69.2
Phvul.008G251900 Phaseolus vulgaris HOM05D001679 ORTHO05D003617 7.2e-08 60.5 39 69.2
Psat3g056080 Pisum sativum HOM05D001679 ORTHO05D003617 7.2e-08 60.5 39 56.4
Potri.002G035600 Populus trichocarpa HOM05D001679 ORTHO05D003617 7.2e-08 60.5 39 66.7
Sabra02G0028800 Salix brachista HOM05D001679 ORTHO05D003617 7.2e-08 60.5 39 64.1
DCAR_030752 Daucus carota HOM05D001679 ORTHO05D003617 9.4e-08 60.1 36 69.4
Migut.G00504 Erythranthe guttata HOM05D001679 ORTHO05D003617 9.4e-08 60.1 39 64.1
MD05G1193600 Malus domestica HOM05D001679 ORTHO05D003617 9.4e-08 60.1 37 67.6
Eucgr.H00145 Eucalyptus grandis HOM05D001679 ORTHO05D003617 1.2e-07 59.7 39 64.1
Medtr1g041495 Medicago truncatula HOM05D001679 ORTHO05D003617 1.2e-07 59.7 39 69.2
Mapoly0022s0179 Marchantia polymorpha HOM05D001679 ORTHO05D003617 2.1e-07 58.9 39 66.7
VMungo0720G2794 Vigna mungo HOM05D001679 ORTHO05D003617 2.1e-07 58.9 39 66.7
MD10G1180300 Malus domestica HOM05D001679 ORTHO05D003617 3.6e-07 58.2 37 64.9
TPR.G25152 Trifolium pratense HOM05D001679 ORTHO05D003617 3.6e-07 58.2 39 66.7
TPR.G7245 Trifolium pratense HOM05D001679 ORTHO05D003617 3.6e-07 58.2 39 66.7
Sc17g0002910 Simmondsia chinensis HOM05D001679 ORTHO05D003617 4.7e-07 57.8 39 64.1
Pp3c17_13810 Physcomitrium patens HOM05D001679 ORTHO05D003617 1.0e-06 56.6 36 69.4
AUR62008750 Chenopodium quinoa HOM05D001679 ORTHO05D003617 1.8e-06 55.8 39 59.0
HanXRQChr01g0023171 Helianthus annuus HOM05D001679 ORTHO05D003617 1.8e-06 55.8 39 59.0
HanXRQChr10g0305291 Helianthus annuus HOM05D001679 ORTHO05D003617 4.0e-06 54.7 27 88.9


User provided reference genes

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