Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-61 239.2 121 100.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 6.8e-39 164.1 143 67.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 9.8e-38 160.2 138 68.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.1e-36 156.8 138 66.7
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.4e-36 156.4 138 65.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.8e-36 156.0 138 63.8
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 4.1e-36 154.8 138 65.9
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 9.2e-36 153.7 145 63.4
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 9.2e-36 153.7 145 63.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.6e-32 141.7 146 58.9
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 8.0e-32 140.6 149 57.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 8.0e-32 140.6 149 57.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.4e-31 139.8 138 60.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.0e-31 138.3 138 59.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 7.5e-30 134.0 138 57.2
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 9.8e-30 133.7 138 56.5
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-29 133.3 138 58.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.2e-29 132.5 138 55.8
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.9e-29 132.1 138 55.8
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.9e-29 132.1 138 54.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.9e-29 132.1 138 55.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.9e-29 132.1 138 55.8
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 3.7e-29 131.7 138 55.8
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.7e-29 131.7 138 57.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.7e-29 131.7 138 55.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 3.7e-29 131.7 138 55.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 3.7e-29 131.7 138 55.8
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 4.9e-29 131.3 142 54.9
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 4.9e-29 131.3 138 55.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.4e-29 131.0 134 58.2
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.3e-29 130.6 138 56.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.3e-29 130.6 138 56.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.4e-28 129.0 138 56.5
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 3.2e-28 128.6 138 55.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.2e-28 128.6 158 50.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.2e-28 127.1 138 54.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 9.2e-28 127.1 138 54.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.2e-27 126.7 138 53.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.2e-27 126.7 138 54.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.2e-27 126.7 138 54.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-27 126.3 138 54.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-27 126.3 138 52.9
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.6e-27 126.3 138 54.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 2.0e-27 125.9 138 54.3
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.0e-27 125.9 138 52.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.0e-27 125.9 138 55.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.7e-27 125.6 138 53.6
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.7e-27 125.6 138 53.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.7e-27 125.6 138 55.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.7e-27 125.6 138 53.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.6e-27 124.8 138 54.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 5.9e-27 124.4 138 52.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.8e-27 124.0 140 52.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 7.8e-27 124.0 140 52.1
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.3e-26 123.2 138 51.4
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.7e-26 122.9 139 51.1
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.7e-26 122.9 138 52.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.7e-26 122.9 138 52.9
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-26 122.9 138 51.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.3e-26 122.5 138 51.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.3e-26 122.5 138 52.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.0e-26 122.1 138 52.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.0e-26 122.1 138 52.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.0e-26 121.3 137 51.1
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.0e-26 121.3 138 52.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 6.6e-26 120.9 154 48.7
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-25 120.2 116 59.5
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.5e-25 119.8 137 54.0
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.5e-25 119.8 138 52.2
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-25 119.8 138 52.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-25 119.4 113 61.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-24 116.7 138 51.4
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.2e-24 116.7 137 51.1
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.6e-24 116.3 138 50.0
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-24 116.3 138 52.2
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-24 116.3 138 52.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.6e-24 116.3 138 50.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.6e-24 116.3 138 50.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.1e-24 115.9 138 49.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.1e-24 115.9 137 50.4
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.1e-24 115.9 137 50.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.1e-24 115.9 138 51.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-24 115.5 138 49.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-24 115.5 138 50.0
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.8e-24 115.5 138 50.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 3.6e-24 115.2 138 50.7
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.7e-24 114.8 138 51.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 4.7e-24 114.8 138 48.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 6.2e-24 114.4 137 48.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 8.0e-24 114.0 141 49.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.0e-23 113.6 138 50.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.4e-23 113.2 142 48.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.4e-23 113.2 137 50.4
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-23 112.8 138 50.7
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.3e-23 112.5 143 49.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.3e-23 112.5 137 50.4
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.1e-23 112.1 138 50.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.0e-23 111.7 138 49.3
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.2e-23 111.3 138 50.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.2e-23 111.3 138 50.0
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.2e-22 110.2 138 50.0
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.5e-22 109.8 123 55.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.0e-22 109.4 137 49.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 4.4e-22 108.2 152 44.1
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.9e-21 105.5 138 47.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.4e-20 102.4 170 40.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.4e-20 102.4 172 40.7
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.4e-20 101.3 95 63.2
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 7.0e-20 100.9 171 39.2
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.6e-19 98.2 138 45.7
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.0e-19 97.8 138 44.9
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 7.8e-19 97.4 71 71.8
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 7.8e-19 97.4 71 71.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.0e-18 97.1 136 44.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.1e-17 93.6 138 42.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.2e-16 90.1 134 44.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.6e-16 88.6 134 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 4.7e-16 88.2 138 41.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.7e-16 88.2 112 50.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.2e-16 87.8 168 36.3
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 8.1e-16 87.4 77 63.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-14 82.8 119 46.2
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 5.8e-14 81.3 116 45.7
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 7.5e-14 80.9 95 54.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 9.8e-14 80.5 96 53.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.2e-13 79.3 128 39.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.9e-13 78.2 112 44.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 6.4e-13 77.8 112 45.5
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 8.3e-13 77.4 96 47.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.9e-12 76.3 156 34.6
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-11 73.2 44 81.8
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.1e-11 72.8 114 43.9
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-11 71.6 115 43.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 4.6e-11 71.6 74 52.7
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-10 70.1 71 54.9
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.7e-10 69.7 68 60.3
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.3e-10 69.3 149 33.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.9e-10 68.6 60 61.7
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.1e-10 68.2 42 73.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.1e-10 68.2 67 61.2
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.6e-10 67.4 70 55.7
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.6e-10 67.4 68 58.8
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.6e-10 67.4 57 61.4
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-09 67.0 61 59.0
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.1e-09 67.0 61 59.0
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.5e-09 66.6 112 42.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-09 66.6 44 72.7
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.3e-09 65.5 124 38.7
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.6e-09 64.7 44 70.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.6e-09 64.7 64 60.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 7.3e-09 64.3 73 53.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 4.7e-08 61.6 69 53.6
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 4.7e-08 61.6 125 37.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.8e-07 59.7 67 49.3


User provided reference genes

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