Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23694 Brassica carinata HOM05D005918 ORTHO05D008619 1.2e-80 303.1 153 100.0
BcaB05g23693 Brassica carinata HOM05D005918 ORTHO05D008619 2.0e-64 249.2 124 100.0
BcaC03g16217 Brassica carinata HOM05D005918 ORTHO05D008619 2.5e-62 242.3 124 96.8
C02p39950 Brassica napus HOM05D005918 ORTHO05D008619 2.5e-62 242.3 124 96.8
BolC2t10022H Brassica oleracea HOM05D005918 ORTHO05D008619 2.5e-62 242.3 124 96.8
A02p25150 Brassica napus HOM05D005918 ORTHO05D008619 1.2e-61 240.0 124 96.0
BraA02t07503Z Brassica rapa HOM05D005918 ORTHO05D008619 1.2e-61 240.0 124 96.0
Thhalv10029130m.g Eutrema salsugineum HOM05D005918 ORTHO05D008619 9.7e-59 230.3 124 91.1
AL6G49710 Arabidopsis lyrata HOM05D005918 ORTHO05D008619 1.3e-58 229.9 124 91.1
Sp6g03260 Schrenkiella parvula HOM05D005918 ORTHO05D008619 3.7e-58 228.4 124 90.3
AT4G03220 Arabidopsis thaliana HOM05D005918 ORTHO05D008619 1.1e-57 226.9 124 89.5
CARHR251670 Cardamine hirsuta HOM05D005918 ORTHO05D008619 9.1e-57 223.8 124 89.5
Carub.0006s3383 Capsella rubella HOM05D005918 ORTHO05D008619 2.9e-55 218.8 124 87.1
Aa31LG5G2720 Aethionema arabicum HOM05D005918 ORTHO05D008619 7.2e-54 214.2 124 86.3
THA.LOC104826019 Tarenaya hassleriana HOM05D005918 ORTHO05D008619 7.0e-41 171.0 125 70.4
Ciclev10018135m.g Citrus clementina HOM05D005918 ORTHO05D008619 5.7e-35 151.4 126 61.1
CiPaw.03G165700 Carya illinoinensis HOM05D005918 ORTHO05D008619 1.3e-34 150.2 123 63.4
Cpa.g.sc34.53 Carica papaya HOM05D005918 ORTHO05D008619 2.2e-34 149.4 126 60.3
FAN02G3920 Fragaria x ananassa HOM05D005918 ORTHO05D008619 2.2e-34 149.4 126 61.9
Atru.chr6.3104 Acer truncatum HOM05D005918 ORTHO05D008619 2.9e-34 149.1 126 61.9
Cfa014484 Carpinus fangiana HOM05D005918 ORTHO05D008619 4.9e-34 148.3 126 61.1
FvH4_6g44010 Fragaria vesca HOM05D005918 ORTHO05D008619 4.9e-34 148.3 126 61.1
QL08p034510 Quercus lobata HOM05D005918 ORTHO05D008619 4.9e-34 148.3 126 62.7
Thecc.02G165700 Theobroma cacao HOM05D005918 ORTHO05D008619 4.9e-34 148.3 126 62.7
Gorai.013G072400 Gossypium raimondii HOM05D005918 ORTHO05D008619 1.8e-33 146.4 125 60.8
Haze_13001 Corylus avellana HOM05D005918 ORTHO05D008619 2.4e-33 146.0 126 60.3
Duzib052G0766 Durio zibethinus HOM05D005918 ORTHO05D008619 4.1e-33 145.2 126 61.9
Gohir.D13G063800 Gossypium hirsutum HOM05D005918 ORTHO05D008619 4.1e-33 145.2 125 60.0
Gohir.A13G058200 Gossypium hirsutum HOM05D005918 ORTHO05D008619 9.2e-33 144.1 125 60.0
Rhsim06G0154300 Rhododendron simsii HOM05D005918 ORTHO05D008619 4.6e-32 141.7 141 55.3
Duzib132G0072 Durio zibethinus HOM05D005918 ORTHO05D008619 5.9e-32 141.4 126 59.5
Potri.013G151200 Populus trichocarpa HOM05D005918 ORTHO05D008619 5.9e-32 141.4 127 58.3
Dinv13860 Davidia involucrata HOM05D005918 ORTHO05D008619 7.8e-32 141.0 126 57.1
Sabra13G0121500 Salix brachista HOM05D005918 ORTHO05D008619 7.8e-32 141.0 127 58.3
Prupe.3G224700 Prunus persica HOM05D005918 ORTHO05D008619 3.0e-31 139.0 126 59.5
RcHm_v2.0_Chr2g0160751 Rosa chinensis HOM05D005918 ORTHO05D008619 3.0e-31 139.0 126 58.7
MD09G1101500 Malus domestica HOM05D005918 ORTHO05D008619 8.6e-31 137.5 126 58.7
Lalb_Chr19g0135611 Lupinus albus HOM05D005918 ORTHO05D008619 1.1e-30 137.1 126 58.7
Phvul.011G108100 Phaseolus vulgaris HOM05D005918 ORTHO05D008619 1.1e-30 137.1 126 57.1
VMungo1127G0943 Vigna mungo HOM05D005918 ORTHO05D008619 1.9e-30 136.3 126 56.3
Manes.13G075841 Manihot esculenta HOM05D005918 ORTHO05D008619 3.3e-30 135.6 126 56.3
TWI75G1325 Tripterygium wilfordii HOM05D005918 ORTHO05D008619 4.7e-29 131.7 126 55.6
Actinidia27026 Actinidia chinensis HOM05D005918 ORTHO05D008619 8.0e-29 131.0 127 53.5
Psat7g156000 Pisum sativum HOM05D005918 ORTHO05D008619 1.4e-28 130.2 126 54.8
Glyma.12G103400 Glycine max HOM05D005918 ORTHO05D008619 1.8e-28 129.8 126 54.8
CAN.G640.5 Capsicum annuum HOM05D005918 ORTHO05D008619 5.2e-28 128.3 125 52.0
Medtr4g045900 Medicago truncatula HOM05D005918 ORTHO05D008619 1.5e-27 126.7 126 54.0
CSS0021142 Camellia sinensis var. sinensis HOM05D005918 ORTHO05D008619 3.4e-27 125.6 126 51.6
TPR.G24493 Trifolium pratense HOM05D005918 ORTHO05D008619 7.5e-27 124.4 126 54.0
Peaxi162Scf00007g01619 Petunia axillaris HOM05D005918 ORTHO05D008619 9.8e-27 124.0 127 52.0
PGSC0003DMG400026160 Solanum tuberosum HOM05D005918 ORTHO05D008619 1.7e-26 123.2 127 51.2
Sopen07g026590 Solanum pennellii HOM05D005918 ORTHO05D008619 6.4e-26 121.3 127 50.4
Solyc07g053040.3 Solanum lycopersicum HOM05D005918 ORTHO05D008619 1.4e-25 120.2 127 49.6
Lj3g0013576 Lotus japonicus HOM05D005918 ORTHO05D008619 1.9e-25 119.8 136 48.5
Nitab4.5_0004473g0010 Nicotiana tabacum HOM05D005918 ORTHO05D008619 2.4e-25 119.4 126 50.0
Oeu029444.1 Olea europaea HOM05D005918 ORTHO05D008619 2.0e-24 116.3 123 48.8
Cc05_g05630 Coffea canephora HOM05D005918 ORTHO05D008619 4.6e-24 115.2 123 49.6
Migut.M00375 Erythranthe guttata HOM05D005918 ORTHO05D008619 7.8e-24 114.4 126 48.4
Nitab4.5_0001134g0010 Nicotiana tabacum HOM05D005918 ORTHO05D008619 2.3e-23 112.8 102 52.9
Lj1C747T5 Lonicera japonica HOM05D005918 ORTHO05D008619 1.1e-22 110.5 123 47.2
SGA_v2.0_scaffold147G36349 Striga asiatica HOM05D005918 ORTHO05D008619 1.5e-22 110.2 126 47.6
Lalb_Chr03g0028981 Lupinus albus HOM05D005918 ORTHO05D008619 1.2e-21 107.1 126 48.4
Sed0020119 Sechium edule HOM05D005918 ORTHO05D008619 3.6e-21 105.5 125 42.4
ClCG02G011180 Citrullus lanatus HOM05D005918 ORTHO05D008619 5.2e-20 101.7 128 41.4
FAN05G1098 Fragaria x ananassa HOM05D005918 ORTHO05D008619 4.4e-19 98.6 112 50.0
Sc06g0006100 Simmondsia chinensis HOM05D005918 ORTHO05D008619 4.4e-19 98.6 129 45.0
CsaV3_6G012610 Cucumis sativus L. HOM05D005918 ORTHO05D008619 6.4e-18 94.7 128 40.6
arahy.Tifrunner.gnm1.ann1.XX3M9U Arachis hypogaea HOM05D005918 ORTHO05D008619 4.1e-17 92.0 82 59.8
CANSAT64G2706 Cannabis sativa HOM05D005918 ORTHO05D008619 7.1e-17 91.3 108 46.3
MELO3C019770.2 Cucumis melo HOM05D005918 ORTHO05D008619 1.6e-16 90.1 106 43.4
MD17G1089100 Malus domestica HOM05D005918 ORTHO05D008619 1.0e-15 87.4 125 43.2
Nn1g06897 Nelumbo nucifera HOM05D005918 ORTHO05D008619 1.0e-15 87.4 134 35.1
Lsat_1_v5_gn_3_42821 Lactuca sativa HOM05D005918 ORTHO05D008619 1.2e-13 80.5 105 41.0
PGR042G3696 Punica granatum HOM05D005918 ORTHO05D008619 1.4e-12 77.0 131 42.0
arahy.Tifrunner.gnm1.ann1.6NUN1E Arachis hypogaea HOM05D005918 ORTHO05D008619 3.1e-12 75.9 72 56.9
Dinv18568 Davidia involucrata HOM05D005918 ORTHO05D008619 2.0e-11 73.2 114 38.6
CARHR116160 Cardamine hirsuta HOM05D005918 ORTHO05D008619 7.6e-11 71.2 39 92.3
Eucgr.A01743 Eucalyptus grandis HOM05D005918 ORTHO05D008619 8.4e-10 67.8 128 38.3
Prupe.3G224500 Prunus persica HOM05D005918 ORTHO05D008619 1.6e-08 63.5 110 35.5
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 4.6e-08 62.0 138 32.6
RcHm_v2.0_Chr5g0039731 Rosa chinensis HOM05D005918 ORTHO05D008619 3.9e-07 58.9 107 34.6
ECA246G3314 Erigeron canadensis HOM05D005918 ORTHO05D008619 6.6e-07 58.2 110 32.7
Prupe.3G224400 Prunus persica HOM05D005918 ORTHO05D008619 1.1e-06 57.4 111 30.6
arahy.Tifrunner.gnm1.ann1.AV2ZVS Arachis hypogaea HOM05D005918 ORTHO05D008619 7.3e-06 54.7 48 54.2


User provided reference genes

Program Settings