Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 2.1e-101 372.5 204 100.0
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 3.4e-67 258.8 205 77.1
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 3.4e-67 258.8 205 77.1
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 3.8e-66 255.4 195 75.9
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 3.0e-63 245.7 192 75.0
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 5.1e-63 245.0 205 74.1
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 1.5e-62 243.4 194 73.7
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 1.9e-62 243.0 205 73.7
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 5.6e-62 241.5 194 73.2
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 5.6e-62 241.5 193 74.6
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 1.6e-61 240.0 205 73.2
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 1.8e-60 236.5 195 71.8
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 2.2e-58 229.6 197 69.5
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 3.2e-57 225.7 194 69.1
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 7.9e-56 221.1 195 68.7
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 1.0e-55 220.7 199 66.3
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 1.3e-50 203.8 198 68.7
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 1.3e-47 193.7 168 70.2
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 4.8e-45 185.3 194 57.7
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 1.2e-32 144.1 190 47.4
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 4.6e-32 142.1 175 53.7
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 3.0e-31 139.4 167 50.3
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 6.7e-31 138.3 193 45.1
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 2.0e-30 136.7 185 45.4
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 2.6e-30 136.3 174 50.0
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 4.3e-30 135.6 169 50.9
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 5.7e-30 135.2 193 44.6
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 9.7e-30 134.4 191 44.5
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 2.8e-29 132.9 196 44.9
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 6.3e-29 131.7 184 45.7
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 1.8e-28 130.2 184 44.6
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 1.8e-28 130.2 183 46.4
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 4.1e-28 129.0 173 46.8
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 4.1e-28 129.0 190 47.4
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 5.3e-28 128.6 232 40.1
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 5.3e-28 128.6 228 42.1
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 1.2e-27 127.5 175 48.6
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 1.5e-27 127.1 193 44.0
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 1.5e-27 127.1 167 46.7
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 2.0e-27 126.7 178 44.9
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 2.0e-27 126.7 172 48.8
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 2.0e-27 126.7 154 50.0
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 5.9e-27 125.2 167 46.7
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 5.9e-27 125.2 167 46.1
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 5.9e-27 125.2 186 44.6
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.0e-26 124.4 199 41.7
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 1.3e-26 124.0 188 42.0
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 1.3e-26 124.0 165 49.1
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 2.9e-26 122.9 178 47.2
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 3.8e-26 122.5 176 44.9
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 5.0e-26 122.1 179 46.4
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 5.0e-26 122.1 199 42.7
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 1.1e-25 120.9 189 43.4
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 1.4e-25 120.6 220 38.6
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 2.5e-25 119.8 193 42.5
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 3.2e-25 119.4 190 43.2
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 3.2e-25 119.4 190 43.2
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 5.5e-25 118.6 162 47.5
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 5.5e-25 118.6 190 43.2
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 7.2e-25 118.2 174 47.1
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 7.2e-25 118.2 192 42.2
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 9.4e-25 117.9 195 42.1
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 1.2e-24 117.5 181 44.2
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 1.2e-24 117.5 181 43.6
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 2.1e-24 116.7 152 46.7
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 2.1e-24 116.7 190 43.7
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 3.6e-24 115.9 189 43.4
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 3.6e-24 115.9 172 47.7
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 4.7e-24 115.5 165 44.8
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 1.0e-23 114.4 173 45.7
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 1.0e-23 114.4 164 48.2
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 1.8e-23 113.6 172 46.5
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 1.8e-23 113.6 170 46.5
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 5.2e-23 112.1 175 43.4
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 8.8e-23 111.3 194 42.3
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 1.1e-22 110.9 158 46.2
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 1.1e-22 110.9 168 44.0
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 1.5e-22 110.5 195 41.5
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 1.5e-22 110.5 190 41.6
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 2.0e-22 110.2 174 43.7
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 2.0e-22 110.2 150 44.7
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 2.6e-22 109.8 235 37.0
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 2.6e-22 109.8 190 42.1
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 3.3e-22 109.4 168 45.2
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 3.3e-22 109.4 193 42.0
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 4.4e-22 109.0 193 40.9
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 1.3e-21 107.5 210 37.6
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 1.3e-21 107.5 154 45.5
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 2.8e-21 106.3 208 38.5
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 3.7e-21 105.9 208 39.4
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 5.3e-20 102.1 204 40.2
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 7.0e-20 101.7 145 41.4
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 1.2e-19 100.9 195 40.5
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.6e-19 100.5 187 38.5
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 3.8e-18 95.9 184 39.7
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 3.8e-18 95.9 185 38.4
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 8.5e-18 94.7 155 41.9
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 4.2e-17 92.4 204 35.8
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 1.0e-15 87.8 150 40.7
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 4.0e-15 85.9 148 42.6
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 5.2e-15 85.5 126 42.1
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 6.7e-15 85.1 147 42.9
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 9.7e-14 81.3 179 36.9
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.3e-13 80.9 168 38.1
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 1.7e-13 80.5 159 40.3
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 1.1e-12 77.8 106 41.5
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 2.4e-12 76.6 191 38.2
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 3.1e-12 76.3 199 31.7
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 7.0e-12 75.1 149 40.9
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 7.0e-12 75.1 149 40.3
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 5.9e-11 72.0 60 71.7
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 5.9e-11 72.0 162 37.7
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 3.8e-10 69.3 132 40.2
SHI15557 Sapria himalayana HOM05D006618 ORTHO05D008291 6.5e-10 68.6 57 66.7
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 1.9e-09 67.0 44 70.5
Cfa006024 Carpinus fangiana HOM05D006618 ORTHO05D008291 9.4e-09 64.7 69 52.2
SEGI_31360 Sequoiadendron giganteum HOM05D006618 ORTHO05D008291 6.1e-08 62.0 91 45.1
Mapoly0001s0215 Marchantia polymorpha HOM05D006618 ORTHO05D008291 5.2e-07 58.9 193 30.6
Actinidia24851 Actinidia chinensis HOM05D006618 ORTHO05D008291 8.8e-07 58.2 117 36.8
AagrBONN_evm.TU.Sc2ySwM_117.1999 Anthoceros agrestis HOM05D006618 ORTHO05D008291 4.4e-06 55.8 55 56.4


User provided reference genes

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