Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 4.0e-90 334.7 166 100.0
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 3.2e-79 298.5 163 90.8
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 3.2e-79 298.5 163 90.8
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 3.2e-79 298.5 163 90.8
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 2.3e-77 292.4 163 89.0
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 2.3e-77 292.4 163 89.0
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 5.2e-74 281.2 168 82.7
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 8.9e-74 280.4 166 82.5
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 1.1e-71 273.5 166 81.3
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 1.9e-71 272.7 166 82.5
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 5.4e-71 271.2 166 81.9
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 5.4e-71 271.2 166 82.5
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-70 269.6 164 81.1
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 1.9e-68 262.7 166 78.9
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 1.2e-67 260.0 166 77.7
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 3.6e-67 258.5 166 78.3
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 8.1e-67 257.3 190 71.6
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 6.6e-61 237.7 153 77.1
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 3.0e-53 212.2 163 65.0
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 8.7e-45 184.1 172 54.1
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.1e-44 183.7 172 54.1
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 2.5e-44 182.6 170 53.5
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 1.6e-43 179.9 163 53.4
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 6.2e-43 177.9 167 56.3
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 8.1e-43 177.6 154 56.5
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 1.1e-42 177.2 173 54.9
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 9.0e-42 174.1 174 54.6
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 1.2e-41 173.7 133 64.7
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 1.5e-41 173.3 153 54.2
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 3.4e-41 172.2 156 51.9
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 4.5e-41 171.8 127 63.0
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 4.5e-41 171.8 127 62.2
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 7.6e-41 171.0 166 54.2
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 9.9e-41 170.6 112 67.0
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 9.9e-41 170.6 112 67.0
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 1.3e-40 170.2 165 52.1
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.3e-40 170.2 163 56.4
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.7e-40 169.9 164 53.0
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 1.7e-40 169.9 136 56.6
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.9e-40 169.1 128 57.0
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 8.4e-40 167.5 166 52.4
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 8.4e-40 167.5 109 66.1
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 8.4e-40 167.5 116 65.5
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 1.1e-39 167.2 120 65.0
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 1.1e-39 167.2 120 65.0
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 1.1e-39 167.2 142 56.3
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.4e-39 166.8 165 53.9
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.9e-39 166.4 128 58.6
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 2.4e-39 166.0 168 51.8
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 3.2e-39 165.6 167 49.1
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 4.2e-39 165.2 158 51.9
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 4.2e-39 165.2 136 58.1
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 5.4e-39 164.9 113 68.1
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 7.1e-39 164.5 158 51.3
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 9.3e-39 164.1 166 51.8
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 9.3e-39 164.1 166 52.4
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 1.2e-38 163.7 131 58.8
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.6e-38 163.3 106 66.0
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 2.7e-38 162.5 117 65.0
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 6.0e-38 161.4 110 65.5
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 7.9e-38 161.0 170 48.8
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 1.3e-37 160.2 107 67.3
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 1.3e-37 160.2 127 59.8
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 1.8e-37 159.8 104 68.3
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 3.0e-37 159.1 105 65.7
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 5.1e-37 158.3 172 48.8
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 1.5e-36 156.8 120 61.7
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 1.5e-36 156.8 122 61.5
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.9e-36 156.4 132 53.0
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 4.3e-36 155.2 104 65.4
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 7.4e-36 154.5 173 48.0
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 9.6e-36 154.1 107 64.5
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 2.8e-35 152.5 131 56.5
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 2.8e-35 152.5 101 66.3
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 3.7e-35 152.1 169 46.7
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 4.8e-35 151.8 156 50.6
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 8.1e-35 151.0 100 66.0
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 2.6e-33 146.0 115 60.9
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 1.0e-32 144.1 106 65.1
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 1.3e-32 143.7 100 64.0
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 6.5e-32 141.4 142 51.4
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 8.4e-32 141.0 131 50.4
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 7.1e-31 137.9 193 45.1
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 9.3e-31 137.5 94 61.7
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 1.6e-30 136.7 94 64.9
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 1.6e-30 136.7 113 54.9
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 4.6e-30 135.2 91 64.8
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 5.1e-29 131.7 88 64.8
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 1.1e-28 130.6 102 60.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-27 127.1 101 60.4
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 2.8e-27 125.9 103 54.4
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 4.8e-27 125.2 185 40.5
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 1.1e-26 124.0 126 44.4
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 1.8e-26 123.2 88 61.4
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 4.0e-26 122.1 144 45.8
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 9.0e-26 120.9 108 53.7
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 2.9e-24 115.9 154 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 6.7e-21 104.8 101 49.5
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.3e-19 100.5 72 61.1
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 8.2e-19 97.8 69 63.8
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 4.6e-14 82.0 56 64.3
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 1.1e-12 77.4 94 46.8
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 1.1e-10 70.9 103 41.7
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 1.4e-10 70.5 102 41.2
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 2.4e-10 69.7 176 34.7
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 1.7e-08 63.5 93 43.0


User provided reference genes

Program Settings