Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 8.6e-108 393.7 198 100.0
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.9e-78 296.2 206 79.1
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 7.1e-78 294.3 206 78.2
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 5.1e-76 288.1 208 77.9
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.5e-75 286.6 208 77.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.2e-72 276.9 208 75.0
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 7.6e-72 274.2 201 74.6
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-70 270.4 199 76.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.9e-68 261.9 209 72.2
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-62 243.0 195 71.8
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 3.9e-60 235.3 195 70.8
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.1e-57 227.3 188 70.7
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 4.2e-54 215.3 203 65.5
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 4.2e-54 215.3 203 65.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-51 207.2 202 65.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-47 194.1 202 61.9
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 6.5e-47 191.4 202 61.4
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.6e-45 186.8 188 62.8
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-44 184.1 188 62.2
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.3e-43 179.1 217 53.9
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.3e-42 174.9 218 53.7
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 7.2e-38 161.4 212 48.1
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 6.1e-37 158.3 217 45.2
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.0e-36 157.5 216 47.7
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.4e-36 157.1 202 48.5
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.6e-35 152.9 215 45.6
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 3.3e-35 152.5 210 46.7
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.3e-35 152.5 212 46.7
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.3e-35 152.5 210 47.1
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.4e-35 151.4 210 46.7
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.2e-34 149.8 216 44.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 2.2e-34 149.8 215 45.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.8e-34 149.4 222 43.7
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 3.7e-34 149.1 215 45.1
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 4.8e-34 148.7 220 46.4
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.8e-34 148.7 217 43.8
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.3e-34 148.3 199 45.7
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.8e-33 146.7 221 42.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.4e-33 146.4 219 42.5
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.4e-33 146.4 207 44.4
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.1e-33 146.0 216 44.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.1e-33 146.0 216 44.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.1e-33 145.6 202 47.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.1e-33 145.6 223 44.4
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.3e-33 145.2 213 46.0
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 7.0e-33 144.8 224 44.6
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 9.1e-33 144.4 216 41.7
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 9.1e-33 144.4 216 43.1
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-32 143.7 209 45.5
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.6e-32 143.7 205 45.4
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.0e-32 143.3 201 46.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 2.0e-32 143.3 219 44.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.6e-32 142.9 202 44.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.6e-32 142.9 217 43.8
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.5e-32 142.5 217 43.3
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.5e-32 142.5 202 47.0
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 3.5e-32 142.5 221 43.9
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 5.9e-32 141.7 202 47.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-31 141.0 214 43.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.0e-31 141.0 207 44.4
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.8e-31 139.0 214 43.9
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.8e-31 139.0 213 45.1
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 5.0e-31 138.7 210 44.8
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 5.0e-31 138.7 206 46.1
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 6.5e-31 138.3 201 43.8
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 6.5e-31 138.3 214 43.5
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.1e-30 137.5 210 43.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.1e-30 137.5 218 44.0
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.5e-30 137.1 210 44.3
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.5e-30 137.1 215 43.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-30 136.7 217 42.4
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.9e-30 136.7 203 43.8
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 2.5e-30 136.3 212 47.2
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.2e-30 135.6 225 42.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.5e-30 135.2 203 45.3
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.2e-30 134.8 196 43.4
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 7.2e-30 134.8 221 42.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.6e-29 133.7 209 43.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.6e-29 133.7 204 42.2
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.1e-29 133.3 208 44.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.1e-29 133.3 221 42.1
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.7e-29 132.9 223 41.7
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.7e-29 132.9 172 44.8
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.7e-29 132.9 221 41.6
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 3.6e-29 132.5 225 40.9
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.7e-29 132.1 221 43.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 6.1e-29 131.7 213 40.8
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 6.1e-29 131.7 208 45.2
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 6.1e-29 131.7 232 41.4
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 8.0e-29 131.3 212 42.5
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 8.0e-29 131.3 213 44.6
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.0e-28 131.0 219 42.0
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.0e-28 131.0 219 42.9
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.4e-28 130.6 199 46.7
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.4e-28 130.6 211 43.6
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.3e-28 129.8 222 42.3
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.0e-28 129.4 227 41.9
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 6.7e-28 128.3 217 42.9
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 6.7e-28 128.3 209 42.6
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.7e-28 128.3 215 41.9
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 8.8e-28 127.9 222 41.0
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.1e-27 127.5 211 40.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.1e-27 127.5 223 40.8
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.1e-27 127.5 219 41.1
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.5e-27 127.1 206 43.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.0e-27 126.7 220 41.4
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 2.6e-27 126.3 84 77.4
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.4e-27 125.6 207 40.6
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.4e-27 125.6 207 40.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 9.7e-27 124.4 222 41.4
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 9.7e-27 124.4 215 40.9
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.3e-26 124.0 180 41.7
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.3e-26 124.0 202 41.1
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.7e-26 123.6 186 46.2
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 6.3e-26 121.7 209 41.6
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.1e-25 120.9 214 40.7
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.4e-25 120.6 201 42.8
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.8e-25 120.2 225 38.7
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.8e-25 120.2 203 40.4
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.3e-25 118.6 163 42.9
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.0e-25 118.2 214 41.1
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 7.0e-25 118.2 231 39.4
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.7e-24 116.3 219 39.3
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 4.5e-24 115.5 201 38.3
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.5e-24 115.5 216 41.2
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.9e-24 115.2 214 39.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.7e-24 114.8 214 40.2
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 7.7e-24 114.8 241 38.6
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.0e-23 114.4 208 38.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.2e-23 113.2 221 38.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.9e-23 112.8 218 36.2
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.9e-23 112.8 191 40.8
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 5.0e-23 112.1 217 38.2
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 8.5e-23 111.3 222 40.1
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-22 110.9 216 38.9
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 4.2e-22 109.0 241 36.5
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.7e-21 106.3 216 38.0
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.0e-20 104.4 229 38.0
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.0e-20 104.4 253 35.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.0e-20 102.4 202 39.1
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 8.8e-20 101.3 79 68.4
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.7e-19 98.6 209 37.8
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 5.7e-19 98.6 225 40.9
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 4.8e-18 95.5 57 78.9
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.1e-17 94.4 197 35.5
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.8e-17 93.6 209 37.8
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.4e-17 93.2 218 34.4
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 5.4e-17 92.0 226 37.6
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.2e-16 90.9 204 37.3
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.7e-16 89.7 88 53.4
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.5e-16 89.4 157 42.7
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.7e-15 87.0 199 35.2
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 5.0e-15 85.5 155 40.0
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 6.5e-15 85.1 197 35.5
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.9e-14 83.6 180 34.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.5e-14 83.2 148 40.5
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 4.2e-14 82.4 172 37.8
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-11 74.3 169 36.7
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 3.4e-11 72.8 120 39.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.4e-09 67.4 126 39.7
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.6e-08 63.9 201 29.9
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.0e-07 61.2 106 42.5
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.3e-07 60.8 69 47.8
BraA03t12266Z Brassica rapa HOM05D044247 ORTHO05D042649 1.5e-06 57.4 40 77.5
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.5e-06 56.6 86 39.5


User provided reference genes

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