Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1766.9 947 100.0
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1606.7 954 91.5
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 0.0e+00 1606.7 954 91.5
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1600.5 954 91.3
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 0.0e+00 1600.5 954 91.3
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1580.8 938 91.6
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 0.0e+00 1436.8 979 81.1
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 0.0e+00 1399.4 956 79.1
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 0.0e+00 1388.6 963 81.1
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 0.0e+00 1384.0 963 81.1
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 0.0e+00 1382.9 960 79.5
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 0.0e+00 1352.8 960 78.2
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 0.0e+00 1080.5 1028 62.9
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 4.3e-298 1028.1 992 60.6
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 8.9e-211 738.0 1068 46.7
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 8.1e-204 714.9 1069 45.3
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 2.3e-203 713.4 1027 46.1
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 5.2e-203 712.2 865 50.8
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 5.4e-200 702.2 1043 45.3
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.6e-196 690.6 1008 45.8
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 2.1e-196 690.3 1071 45.0
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 8.9e-195 684.9 1050 45.0
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 8.9e-195 684.9 1024 44.6
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 1.2e-194 684.5 1054 45.0
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.0e-194 683.7 959 46.2
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 7.1e-192 675.2 1049 44.4
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 1.2e-191 674.5 1016 46.0
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 6.9e-187 658.7 964 44.8
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 5.8e-186 655.6 1025 45.0
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 1.9e-184 650.6 1067 43.5
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 7.1e-184 648.7 1004 44.4
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 4.6e-183 646.0 879 48.6
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 5.6e-181 639.0 959 44.9
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 4.8e-180 636.0 1061 42.1
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 6.9e-179 632.1 1031 42.6
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 7.6e-178 628.6 1020 43.5
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 2.9e-177 626.7 1069 41.4
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 8.4e-177 625.2 1102 40.3
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 1.1e-176 624.8 852 47.2
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 7.1e-176 622.1 1003 43.0
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 9.3e-176 621.7 992 44.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.2e-175 621.3 877 47.5
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 6.0e-175 619.0 912 46.3
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 1.8e-174 617.5 876 47.4
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 6.7e-174 615.5 827 48.2
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 1.1e-173 614.8 978 42.8
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 2.5e-173 613.6 1079 40.8
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 2.8e-172 610.1 943 44.0
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 3.7e-172 609.8 1058 41.5
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.4e-171 607.8 1090 41.7
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 5.3e-171 605.9 945 44.0
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 5.3e-171 605.9 838 45.0
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 6.9e-171 605.5 788 48.7
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 8.4e-169 598.6 1055 41.0
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 1.4e-168 597.8 992 43.4
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 4.2e-168 596.3 1016 42.6
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 9.3e-168 595.1 1008 43.6
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.6e-167 594.3 775 46.7
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 2.7e-167 593.6 1107 40.0
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 6.0e-167 592.4 929 44.6
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 8.2e-164 582.0 860 44.5
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 1.2e-162 578.2 1140 38.4
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 3.4e-162 576.6 963 42.6
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.3e-161 574.7 956 41.8
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 6.5e-161 572.4 972 42.1
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.4e-160 571.2 863 43.9
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.9e-160 570.9 944 42.4
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 4.6e-159 566.2 1037 39.7
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 3.9e-158 563.1 674 52.2
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 7.4e-157 558.9 1080 38.9
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 9.0e-155 552.0 996 40.7
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 4.5e-154 549.7 955 40.7
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.1e-151 539.3 1111 38.3
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 1.1e-149 535.0 887 42.8
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 2.5e-149 533.9 1002 41.1
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 4.3e-149 533.1 1015 39.7
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.7e-148 531.2 1136 37.4
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 3.7e-148 530.0 1006 38.7
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 4.5e-146 523.1 839 43.7
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 1.3e-145 521.5 1073 38.5
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 3.6e-143 513.5 1077 38.0
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 2.6e-141 507.3 780 44.5
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 2.6e-141 507.3 991 39.6
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 2.8e-140 503.8 1010 37.6
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 1.4e-139 501.5 1045 37.8
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 9.1e-139 498.8 957 40.2
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.9e-136 491.1 747 44.0
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 5.5e-136 489.6 1024 36.5
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.1e-133 481.9 708 45.9
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 4.8e-132 476.5 816 40.9
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.1e-131 475.3 968 36.2
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 2.5e-128 464.2 957 37.9
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 3.2e-128 463.8 461 57.5
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.4e-123 447.6 735 42.7
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 7.7e-122 442.6 820 37.3
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 1.0e-121 442.2 474 55.7
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 1.4e-115 421.8 902 36.3
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 7.7e-114 416.0 820 39.1
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.2e-112 410.2 392 58.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.4e-110 405.2 661 42.2
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 5.7e-109 399.8 916 34.8
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 7.8e-106 389.4 459 48.8
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 4.6e-98 363.6 455 49.5
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 1.4e-91 342.0 956 33.4
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 4.9e-84 317.0 293 59.0
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.7e-74 284.6 327 53.2
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 2.5e-72 278.1 780 34.2
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 1.8e-70 271.9 333 46.8
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 4.6e-58 230.7 215 57.7
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.9e-48 198.7 417 39.1
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.9e-44 184.9 161 65.8
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.7e-42 178.3 541 31.2
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 6.1e-42 177.2 313 39.6
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 2.3e-41 175.3 368 35.6
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.3e-40 171.4 401 35.9
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 1.1e-38 166.4 214 48.6
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 4.1e-38 164.5 171 55.0
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 1.7e-36 159.1 1025 24.1
BcaB01g02031 Brassica carinata HOM05D002567 ORTHO05D006538 1.9e-35 155.6 449 34.7
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 8.2e-31 140.2 217 43.3
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 4.5e-29 134.4 77 83.1
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 9.4e-27 126.7 151 47.7
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 9.1e-22 110.2 432 28.9
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.5e-21 108.2 76 65.8
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 7.2e-19 100.5 233 30.9
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.6e-18 98.2 83 57.8
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.7e-18 97.8 67 71.6
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.0e-17 94.7 111 49.5
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 3.7e-15 88.2 66 65.2
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.3e-14 84.3 53 73.6
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.2e-11 73.9 202 30.2
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.6e-10 72.8 73 46.6
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.1e-10 72.4 202 30.7
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 3.4e-08 65.1 139 33.1
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.7e-07 62.8 112 42.0
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 3.7e-07 61.6 122 36.1
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 3.7e-07 61.6 87 42.5
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 6.3e-07 60.8 243 26.3
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 6.3e-07 60.8 148 32.4
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 8.3e-07 60.5 85 38.8
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 3.1e-06 58.5 82 42.7
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 4.1e-06 58.2 154 30.5
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 7.0e-06 57.4 183 33.3
FvH4_1g11990 Fragaria vesca HOM05D002848 ORTHO05D003043 7.0e-06 57.4 96 39.6
FAN19G0904 Fragaria x ananassa HOM05D002848 ORTHO05D003043 7.0e-06 57.4 96 39.6
Nitab4.5_0005721g0090 Nicotiana tabacum HOM05D002848 ORTHO05D003043 7.0e-06 57.4 185 31.4
Solyc12g089260.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 7.0e-06 57.4 106 37.7


User provided reference genes

Program Settings